Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2248
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 46 3e-05
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 38 0.007
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 37 0.016
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 34 0.087
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 32 0.47
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 31 0.81
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315... 31 1.1
04_04_0667 + 27097741-27098085,27098203-27098547 30 1.9
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 7.6
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 222 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 401
LT E+ LP T TY+++ ++F+ + QK N S I + K L L
Sbjct: 110 LTLEELRQLPDNTNTYKTVGKVFILEPKSLLLNEQEQKLNDSESAIASMQTSKEYLEKQL 169
Query: 402 NESESNIRDLIQQ 440
E E+NIR+L+QQ
Sbjct: 170 AEVENNIRELLQQ 182
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 279 ARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESES 416
A M +Q+DL+ +K L +K N R+ DLN +K L H ++ES+S
Sbjct: 185 ATMVLQNDLDWLKYQLNEKAN----RLQDLNQQKHLLEHRISESDS 226
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 36.7 bits (81), Expect = 0.016
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Frame = +3
Query: 69 LTTIIKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVL 248
LT I+MA ELKQ V+L+ + E KK +EN+ Q + L +E+
Sbjct: 364 LTKEIQMANEKLNELKQTKVNLENAVSELKKEVENLTEQ-------NRSSELLIQELRDE 416
Query: 249 PPGTKTYESMARMFVQSDLEHIKQNLRQKTNTL------ISRIDDLNNRKVCLNHTLNES 410
K ++ + +QS I Q +K TL + R+ DL ++ + L L E
Sbjct: 417 INSLKDSKNELQNEIQSLRSTISQLNTEKDATLFQHQQSVERVSDLESQLLKLQPELEEI 476
Query: 411 ESNIRDLIQQKRMKNENQPAAES 479
E ++ L+Q K + +A +
Sbjct: 477 EQKVQMLMQDLEQKRQEADSAHA 499
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 291 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNE--SESNIRDLIQQ 440
+++DLEH K+N RQ I +D+L K+ N+ L E +E R+L ++
Sbjct: 261 MKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRELTEE 312
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 31.9 bits (69), Expect = 0.47
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +3
Query: 141 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQ 320
L ++ K I+NIDHQ R++ + L +RE L + + M ++ ++
Sbjct: 565 LALKEKSLIDNIDHQ-----RLE-NEELLKRERADLQRNLQLHRHELEMEMEKKQASKER 618
Query: 321 NLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD-LIQQKRMKNENQPAAE 476
L +K N L ++D + N L +ES I+ L+++K+++ E + E
Sbjct: 619 ELEEKENELNRKMDFVENE---LKRAAELNESKIQKILLEKKQLQKEKEVLVE 668
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 105 LELKQAFVDLQVLMIETKKTIENIDHQLA-VLGRMQMHTNLTQR 233
LEL+Q F+D+ VL+ + ++NI+ Q++ +Q TNL Q+
Sbjct: 1092 LELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQK 1135
>04_03_0841 -
20230920-20230994,20231084-20231164,20231410-20231520,
20232050-20232268
Length = 161
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +3
Query: 270 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 449
ES F++ +LE + R++ + RID +N + L T + E +++++
Sbjct: 64 ESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEKEYKEILEAYNE 123
Query: 450 KNENQ 464
KN+ +
Sbjct: 124 KNKEK 128
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 303 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 428
LEH LR K + L SR++ L K+ L L+E +R+
Sbjct: 84 LEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLRE 125
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 297 SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQ 440
SD+ +K+ L +L RI+ NN+ L L S+ N + ++ +
Sbjct: 438 SDMNTVKEELELTVASLTDRINTSNNKCEHLEFELQSSKENTQQILNE 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,003
Number of Sequences: 37544
Number of extensions: 226002
Number of successful extensions: 491
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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