Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2248
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.8  
AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription fact...    23   6.5  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    23   8.5  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 MQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQN 323
           ++  T  T+  ++ +PP       + RM +Q  +  +KQ+
Sbjct: 229 LRFSTKPTELILECIPPKPSNLTQLLRMLIQRQIAFLKQH 268


>AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription factor
           Deformed protein.
          Length = 59

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 375 RKVCLNHTLNESESNIRDLIQQKRMK 452
           R++ + HTL  SE  I+   Q +RMK
Sbjct: 30  RRIEIAHTLVLSERQIKIWFQNRRMK 55


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 279 ARMFVQSDLEHIKQNLR 329
           A++FV  DL H+K  +R
Sbjct: 224 AKLFVPVDLRHVKHEVR 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,084
Number of Sequences: 2352
Number of extensions: 10298
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)