Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2247
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-1|CAB07242.2|  384|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF304126-1|AAG50239.1|  384|Caenorhabditis elegans RING and zinc...    29   3.4  
Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z92803-1|CAB07242.2|  384|Caenorhabditis elegans Hypothetical
           protein K01G5.1 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 481 GLSLVPPIENRWFCKHYFCAYXFLPTKQXKSKLP 582
           G   V PI  +  CKHYFC    L + Q  SK P
Sbjct: 245 GNPFVDPIVTK--CKHYFCTGCALKSFQKSSKCP 276


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 517  TICSLWVGLGKGRFYIKNLLSLHSIKQSRSLC 422
            ++  LW   G+GRF  +NL +  ++K +  +C
Sbjct: 1220 SVLGLWSSHGEGRFTYRNLQNFQNLKTNGQVC 1251


>AF304126-1|AAG50239.1|  384|Caenorhabditis elegans RING and zinc
           finger protein protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 481 GLSLVPPIENRWFCKHYFCAYXFLPTKQXKSKLP 582
           G   V PI  +  CKHYFC    L + Q  SK P
Sbjct: 245 GNPFVDPIVTK--CKHYFCTGCALKSFQKSSKCP 276


>Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical
           protein F07A5.1b protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 201 PNPQFFEFVQFIXNTSDSPSLRFGNCN*LLISPLFNGCYYTYKPSSSITLSIKKNCIKIR 380
           P P+  EF  F      +  L  G+ N     P+  GC Y  + S S  ++ K  CI I 
Sbjct: 235 PTPRAPEFSSFSDKQRFAAILTDGSYNRFQYFPILVGCEYQLQESVSNFVNHKAQCI-IP 293

Query: 381 CVVLKILAYIGI 416
             V+    +IG+
Sbjct: 294 MNVINEKIFIGL 305


>Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical
           protein F07A5.1a protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 201 PNPQFFEFVQFIXNTSDSPSLRFGNCN*LLISPLFNGCYYTYKPSSSITLSIKKNCIKIR 380
           P P+  EF  F      +  L  G+ N     P+  GC Y  + S S  ++ K  CI I 
Sbjct: 235 PTPRAPEFSSFSDKQRFAAILTDGSYNRFQYFPILVGCEYQLQESVSNFVNHKAQCI-IP 293

Query: 381 CVVLKILAYIGI 416
             V+    +IG+
Sbjct: 294 MNVINEKIFIGL 305


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 256 GESLVFXINCTNSKNCGLGHFCTDGLKCWRARMCP 152
           GE+ +  I C+ +K C  G  C D   C  A  CP
Sbjct: 180 GETPLENIQCSATKPCPNGFSCNDKKCCPYASACP 214


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 CTNSKNCGLGHFCTDG 182
           CT+S  CG G FC +G
Sbjct: 29  CTHSMQCGRGFFCQEG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,646,341
Number of Sequences: 27780
Number of extensions: 246762
Number of successful extensions: 517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)