Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2246
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   198   4e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   103   1e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    95   7e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    60   1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    52   5e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    46   2e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    43   2e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    28   0.91 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.6  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.6  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.6  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   2.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   3.7  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   8.4  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  198 bits (483), Expect = 4e-52
 Identities = 89/101 (88%), Positives = 92/101 (91%)
 Frame = +3

Query: 135 DE*XAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSK 314
           +E  AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV DEA SK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 315 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPRGTP 437
           RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAP   P
Sbjct: 62  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102



 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 424 PEEHPVLLTEAPLNPXANXEKMTQI 498
           PEEHP LLTEAPLNP +N EKMTQI
Sbjct: 98  PEEHPCLLTEAPLNPKSNREKMTQI 122


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  103 bits (248), Expect = 1e-23
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
 Frame = +3

Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSKRGILTL 332
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +V  EA + RG+L +
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71

Query: 333 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPRGTP 437
           + PIE GI+ NW DME+IW + + + +L   P   P
Sbjct: 72  QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107



 Score = 33.5 bits (73), Expect = 0.018
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 424 PEEHPVLLTEAPLNPXANXEKMTQ 495
           PEEHP+LLTE PL    N EK+ +
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAE 126


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 43/97 (44%), Positives = 67/97 (69%), Gaps = 2/97 (2%)
 Frame = +3

Query: 147 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVXDEAXSKRG 320
           A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  V DEA + R 
Sbjct: 4   APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63

Query: 321 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPRG 431
           +L +KYP+E+GI+ ++++M ++W +TF+ +L++ PRG
Sbjct: 64  LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100



 Score = 32.3 bits (70), Expect = 0.042
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 424 PEEHPVLLTEAPLNPXANXEKMTQ 495
           P    +LLTE P+NP AN EKM +
Sbjct: 98  PRGRKILLTEPPMNPVANREKMCE 121


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
 Frame = +3

Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVXDEAX----SK 314
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+  +      SK
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66

Query: 315 RGI------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 425
           R                     +L YPI HG + NWD ME+ W  + +  LR  P
Sbjct: 67  RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121



 Score = 33.1 bits (72), Expect = 0.024
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 424 PEEHPVLLTEAPLNPXANXEKMTQI 498
           PE+H  LLTE PLNP  N E   +I
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEI 145


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = +3

Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSKRGILTL 332
           LV+DNGS   +AG+ G+  P+ VF ++V R R +     + +  + V ++   + G  ++
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82

Query: 333 -KYPIEHGIVTNWDDMEKIWHHTF 401
            + P E  +++NWD ME++  +TF
Sbjct: 83  ARSPFERNVISNWDLMEQVLDYTF 106


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 29/97 (29%), Positives = 46/97 (47%)
 Frame = +3

Query: 147 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSKRGIL 326
           +A+V+D GS   + GF+G+D P+ V PS  G       + G    + Y+     S  G +
Sbjct: 12  SAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIY---KSNPG-M 63

Query: 327 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPRGTP 437
            +K  I +G V NWD    +W +    +L+  P   P
Sbjct: 64  EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 424 PEEHPVLLTEAPLNPXANXEK 486
           P EHP+L+TE   NP  N  K
Sbjct: 96  PLEHPILITEPFDNPPENRVK 116


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 150 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSKRGI-- 323
           +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV DE      I  
Sbjct: 12  SLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPG 65

Query: 324 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 425
           + +K    +GI+ +W+     W      +L+V P
Sbjct: 66  MEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNP 99


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 198 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAXSKRGILTLKYP 341
           G+  PRA F  ++  P H G+++ M  KD    +E  S +G  + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 298 SXT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 182
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 306 VPHLXHKSPSVPYRPSRPDGGAFPRSRGTR 217
           +  L  K+PS PY  SRP   A   S  TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 336 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPRGT 434
           YP   G++ +W ++E +       E+R+ P+G+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPKGS 276


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = -1

Query: 335 FEGQDTSFAXCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 156
           F G   +F  CLI++IR  +SH            D  EHG   II C T L   G I+YY
Sbjct: 47  FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 339 PIEHGIVTNWDDMEKIWHHTFYNELRVAPRGT 434
           PI+ G V +W+ ++  W H  Y+ L   P  T
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDT 143


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 335 FEGQDTSFAXCLISYIRVLLSHTDHHA 255
           +EG+DT+      +Y+R++L  TD  A
Sbjct: 74  YEGEDTTRITRFANYLRIILPGTDQKA 100


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 153 LVVDNGSGMCKAGFAG 200
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,360
Number of Sequences: 5004
Number of extensions: 38986
Number of successful extensions: 97
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)