Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2243
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.21
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 2.0
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 2.6
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 26 4.5
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 7.9
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 25 7.9
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 7.9
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.21
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -1
Query: 364 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 206
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 205 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 44
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -1
Query: 277 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 98
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 97 SSLR 86
+SLR
Sbjct: 200 ASLR 203
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 527 VKSYLSTIFHTNLHTQNFYAFRFF 598
VKS T+ +T LH +Y F FF
Sbjct: 1287 VKSSHKTLLNTELHLTKYYGFSFF 1310
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -3
Query: 284 RDGESRVYPAVR-VHNGERDFINDAVN 207
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = -3
Query: 599 KRIGKRKSFECASSCGK*STSSFLRPDLHSSSTNGTVKIQDQHLDAASFPRFPQVAGNIK 420
KR GKRK ++C S+C + +F+ D+ +SS I+ L + +P +V +K
Sbjct: 355 KRHGKRKVYQC-SNC----SQTFINEDIQNSSAFCPKCIRHSKLFSLPWPCRHKVNRELK 409
Query: 419 QDCLKE 402
+ KE
Sbjct: 410 LEKEKE 415
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 558 RTCTLKTFTLSDSFICEGLNFINVV 632
R+CT+ F+++ +CE LN NV+
Sbjct: 90 RSCTIIYFSMNPYMLCEILNARNVI 114
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 254 VRVHNGERDFINDAVNRVTDVL 189
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 517 CTRLQRMGQLRSRTNILMRPPSHV 446
C R+Q G LRSR ++ P +
Sbjct: 239 CERIQNYGSLRSRDGVMKLPSEEI 262
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 384 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 479
WV L+F+AI+ VP L+ T +GG++++ V
Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 401 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 487
I S NP L S N+ RR D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,084
Number of Sequences: 5004
Number of extensions: 61900
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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