Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2242
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   136   1e-32
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   134   3e-32
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   109   1e-24
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    29   3.2  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  136 bits (329), Expect = 1e-32
 Identities = 69/146 (47%), Positives = 89/146 (60%)
 Frame = +2

Query: 2   APLVVKRLSPXKIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRL 181
           AP+  K+ +  K+ NPLFEKRPK F IG  + P +DL RF +WPK +RIQR + +L++RL
Sbjct: 9   APVPAKKKTE-KVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL 67

Query: 182 KVPPPINQFTXTLDKTTAKGLFKILXKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPN 361
           KVPP +NQFT TLDK  A  LFK+L KYRP                           +P 
Sbjct: 68  KVPPALNQFTRTLDKNLATNLFKMLLKYRP-EDKAAKKERLLKRAQAEAEGKTVEAKKPI 126

Query: 362 TIRSGTNTVTKLVEKNKAQLVVIAHD 439
            ++ G N VT L+E++KAQLVVIAHD
Sbjct: 127 VVKYGLNHVTYLIEQSKAQLVVIAHD 152



 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = +3

Query: 441 VDPIELVLFLPAXCRKMGXPYCIVKGXFRLGALVHR 548
           VDPIELV++LPA CRKM  PYCIVKG  RLG++VH+
Sbjct: 153 VDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHK 188


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  134 bits (325), Expect = 3e-32
 Identities = 66/135 (48%), Positives = 83/135 (61%)
 Frame = +2

Query: 35  KIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRLKVPPPINQFTX 214
           K+ NPLFEKRPK F IG  + P +DL RF +WPK +RIQR + +L++RLKVPP +NQFT 
Sbjct: 3   KVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTR 62

Query: 215 TLDKTTAKGLFKILXKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 394
           TLDK  A  LFK+L KYRP                           +P  ++ G N VT 
Sbjct: 63  TLDKNLATNLFKMLLKYRP-EDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTY 121

Query: 395 LVEKNKAQLVVIAHD 439
           L+E++KAQLVVIAHD
Sbjct: 122 LIEQSKAQLVVIAHD 136



 Score = 33.9 bits (74), Expect = 0.086
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 441 VDPIELVLFLPAXCRKM 491
           VDPIELV++LPA CRKM
Sbjct: 137 VDPIELVVWLPALCRKM 153


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  109 bits (263), Expect = 1e-24
 Identities = 61/146 (41%), Positives = 83/146 (56%)
 Frame = +2

Query: 2   APLVVKRLSPXKIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRL 181
           AP+  ++ +    VNPLFEKRPK F IG  + P +DL RF RWPK +RIQR + VL++RL
Sbjct: 9   APVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRL 68

Query: 182 KVPPPINQFTXTLDKTTAKGLFKILXKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPN 361
           KVPP +NQFT TLDK       ++L + +                            +P 
Sbjct: 69  KVPPALNQFTRTLDKNLGCQKERLLKRAQ-----------------AEAEGKTVEAKKPI 111

Query: 362 TIRSGTNTVTKLVEKNKAQLVVIAHD 439
            ++ G + VT L+E++KAQLVVIAHD
Sbjct: 112 VVKYGLDHVTYLIEQSKAQLVVIAHD 137



 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = +3

Query: 441 VDPIELVLFLPAXCRKMGXPYCIVKGXFRLGALVHR 548
           VDPIELV++LPA CRKM  PYCIVKG  RLG++VH+
Sbjct: 138 VDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHK 173


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 142 PHPAPXGCTSASSESAPSDQP 204
           P PAP    +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,684
Number of Sequences: 37544
Number of extensions: 222351
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)