Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2242
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 144 4e-35
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 132 1e-31
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 110 7e-25
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 93 9e-20
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 29 2.2
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 144 bits (349), Expect = 4e-35
Identities = 68/135 (50%), Positives = 85/135 (62%)
Frame = +2
Query: 35 KIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRLKVPPPINQFTX 214
++ NPLFEKR +NF IG IQP +D+ RF +WPKYIR+QR A+LQ+RLKVPP INQF
Sbjct: 27 EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRT 86
Query: 215 TLDKTTAKGLFKILXKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 394
LD +A+ FK+L KYRP RPNT+R G NT+T+
Sbjct: 87 ALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITR 146
Query: 395 LVEKNKAQLVVIAHD 439
LVE +AQLV+IAHD
Sbjct: 147 LVETRRAQLVLIAHD 161
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +3
Query: 441 VDPIELVLFLPAXCRKMGXPYCIVKGXFRLGALVHR 548
V+P+E+VL LPA CRK PY I+KG LG +V R
Sbjct: 162 VNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRR 197
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 132 bits (320), Expect = 1e-31
Identities = 68/135 (50%), Positives = 85/135 (62%)
Frame = +2
Query: 35 KIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRLKVPPPINQFTX 214
++ NPLFEKR +NF IG IQP +D+ RF +WPKYIR+QR A+LQ+RLKVPP INQF
Sbjct: 27 EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRT 86
Query: 215 TLDKTTAKGLFKILXKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 394
LD +A+ FK+L KYRP RPNT+R G NT+T+
Sbjct: 87 ALDSQSARQAFKLLDKYRP--------------------ESTEVTKRPNTVRHGVNTITR 126
Query: 395 LVEKNKAQLVVIAHD 439
LVE +AQLV+IAHD
Sbjct: 127 LVETRRAQLVLIAHD 141
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +3
Query: 441 VDPIELVLFLPAXCRKMGXPYCIVKGXFRLGALVHR 548
V+P+E+VL LPA CRK PY I+KG LG +V R
Sbjct: 142 VNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRR 177
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 110 bits (264), Expect = 7e-25
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = +2
Query: 35 KIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRLKVPPPINQFTX 214
++ NPLFEKR +NF IG IQP +D+ RF +WPKYIR+QR A+LQ+RLKVPP INQF
Sbjct: 130 EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRT 189
Query: 215 TLDKTTAKGLFKILXKYRP 271
LD +A+ FK+L KYRP
Sbjct: 190 ALDSHSARQAFKLLDKYRP 208
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 93.5 bits (222), Expect = 9e-20
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = +2
Query: 35 KIVNPLFEKRPKNFAIGXGIQPTRDLXRFXRWPKYIRIQRXKAVLQRRLKVPPPINQFTX 214
++ NPLFEKR +NF IG IQP +D+ RF +WPKYIR+QR A+LQ+RLKVPP INQF
Sbjct: 130 EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRT 189
Query: 215 TLD 223
LD
Sbjct: 190 ALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 444 DPIELVLFLPAXCRKMGXPYCIVKGXFRLG 533
+P+E++L LP C PY V+ LG
Sbjct: 61 EPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 192 LRSTNLPXHWTRLQLRA 242
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical protein
T24A11.1a protein.
Length = 938
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 94 SANSGLXQIXKMAQVYPHPAPXGCTSAS-SESAPSDQP 204
+++S L + M+ P P P C S+S S S+P P
Sbjct: 887 TSSSSLNMLASMSPTRPQPIPISCKSSSNSISSPRPSP 924
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,496,589
Number of Sequences: 27780
Number of extensions: 167644
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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