Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2239
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   116   3e-27
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    81   1e-16
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    81   2e-16
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    63   5e-11
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    56   4e-09
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    50   5e-07
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    40   4e-04
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    37   0.003
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    32   0.076
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.6  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    25   8.7  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  116 bits (280), Expect = 3e-27
 Identities = 57/100 (57%), Positives = 66/100 (66%)
 Frame = +2

Query: 365 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 544
           +GPKVT  V FD++ GD+ +G + IGLFGKTVPKT ENF  LA   +G GY+GS FHRVI
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80

Query: 545 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
            NFMIQ            +SIYG RF DENFKL H   GL
Sbjct: 81  PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGL 120



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDG 746
           G +SMANAG D NGSQFFITTV TPWLDG
Sbjct: 119 GLLSMANAGPDSNGSQFFITTVKTPWLDG 147


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 42/90 (46%), Positives = 48/90 (53%)
 Frame = +2

Query: 395 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXX 574
           FD+      +G IV  LF   VPKT  NF  L    +G GY GS FHRVI  FM+Q    
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65

Query: 575 XXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
                   +SIYGE+F DENF LKH   GL
Sbjct: 66  TRGNGTGGKSIYGEKFPDENFALKHNKPGL 95



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
           G +SMANAG + NGSQFFITTV TPWLDG+
Sbjct: 94  GLLSMANAGPNTNGSQFFITTVVTPWLDGK 123


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 46/92 (50%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = +2

Query: 386 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 553
           K+S D KI      TI   LF   VPKT +NF  L    E +G    YKGS+FHRVIKNF
Sbjct: 8   KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63

Query: 554 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKH 649
           M+Q             SIYGE+FEDENF+LKH
Sbjct: 64  MLQGGDFTRGNGTGGESIYGEKFEDENFELKH 95



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +3

Query: 666 VSMANAGKDXNGSQFFITTVXTPWLDGR 749
           +SMANAG + NGSQFFITTV TP LDG+
Sbjct: 101 LSMANAGPNTNGSQFFITTVPTPHLDGK 128


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 43/101 (42%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
 Frame = +2

Query: 389 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 544
           V  D+ I    +G I I LF   VPKT ENF Q          QKP G  YK S FHR+I
Sbjct: 7   VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64

Query: 545 KNFMIQXXXXXXXXXXXXRSIYGER-FEDENFKLKHYGAGL 664
           + FMIQ             +I+  R F DENF LKH   GL
Sbjct: 65  QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGL 105



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
           G +SMANAGKD NG QFFITTV   +LDG+
Sbjct: 104 GLLSMANAGKDSNGCQFFITTVPCDFLDGK 133


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = +2

Query: 419 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 598
           ++G I+I L+ +  PKT +NF+ LA+  EG  Y G  FHRVI +F+IQ            
Sbjct: 9   SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQ-GGDPTGTGRGG 64

Query: 599 RSIYGERFEDE-NFKLKHYGAGL 664
            SIYG++F+DE +  L H GAG+
Sbjct: 65  TSIYGDKFDDEIHSDLHHTGAGI 87



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
           G +SMANAG + N SQFFIT   TPWLDG+
Sbjct: 86  GILSMANAGPNTNSSQFFITLAPTPWLDGK 115


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +3

Query: 666 VSMANAGKDXNGSQFFITTVXTPWLDGR 749
           VSMAN+G + NGSQFFITT  TPWLDG+
Sbjct: 541 VSMANSGPNTNGSQFFITTDLTPWLDGK 568



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 425 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 604
           G I I L+ +  PK  +NF   A   E   Y  + FHR+IKNFMIQ             S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQ-GGDPLGDGTGGES 519

Query: 605 IYGERFEDE-NFKLKH 649
           I+ + FEDE +  LKH
Sbjct: 520 IWKKDFEDEISPNLKH 535


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +2

Query: 425 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 604
           G I I L+ K VPK   NF QL    EG  Y G+  HRV+  F+IQ             S
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQ-GGDPTGTGMGGES 77

Query: 605 IYGERFEDENF-KLKHYGAGL 664
           IYGE F  E   +L+    GL
Sbjct: 78  IYGEPFAVETHPRLRFIRRGL 98



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
           G V MA    + N SQFFIT   TP  +G+
Sbjct: 97  GLVGMACTENEGNNSQFFITLGPTPEWNGK 126


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 419 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 598
           N G I I L     P    NF QLA++     Y+ + FHR I  FMIQ            
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQ-GGDPSGTGRGG 338

Query: 599 RSIYGERFEDENFK-LKHYGAGL 664
           +SI+G+ F+DE    LKH   G+
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGI 361



 Score = 33.9 bits (74), Expect = 0.025
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
           G +SMAN GK+ NGSQFFI       LD +
Sbjct: 360 GIISMANRGKNTNGSQFFILYGPAKHLDNK 389


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 413 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 562
           +  +G +VI LF K  PKT ENF +L +    + Y    F+ +  N+  Q
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQ 52


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 601 APSSSITLGKITTLDHEIFNYSVELAPFVPLPLRFLS*LKEVLSCLRYSLS 449
           +PSS + L K+  LDH + + S    P  P    +++  K+  S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 411  PIFMSKLTL*VTLG-PLGISSDLALAMNNKIPKAIVRVPMIKTSLVRFL 268
            PIF  KL + +TLG  L ISS     +   + KA V   ++ TS + FL
Sbjct: 3530 PIFQGKLDMAITLGHKLSISSAKLSTICRSVLKASVNSALL-TSWICFL 3577


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 283 FSSFPCYFYKIRFECLFFQNLRY 215
           FSSF   F+++ F C FF  L Y
Sbjct: 11  FSSFESLFFRLFFVCSFFFPLLY 33


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 239 TFETNFVKIARKRTKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTHKV 391
           TF  N+  IA+K  + V I+G   +   ++    S +SD I    K   ++
Sbjct: 119 TFGPNYSVIAKKSLRYVPILGWFMILSDVVFIDRSRRSDAIQLFAKAARRM 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,021
Number of Sequences: 5004
Number of extensions: 58599
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)