Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2239
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 110 1e-24
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 106 2e-23
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 101 8e-22
09_06_0359 + 22508900-22509439 88 8e-18
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 87 1e-17
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 83 3e-16
02_01_0160 + 1116160-1116678 78 7e-15
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 70 2e-12
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 68 9e-12
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 58 1e-08
10_01_0309 + 3417602-3418147 54 1e-07
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 54 1e-07
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 52 5e-07
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 50 2e-06
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 49 3e-06
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 46 4e-05
06_01_0214 + 1634171-1634173,1634263-1634742 45 6e-05
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 44 1e-04
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 33 0.24
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 30 2.3
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 3.9
10_01_0310 + 3425099-3425218 29 5.2
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 28 9.1
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 110 bits (264), Expect = 1e-24
Identities = 57/116 (49%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Frame = +2
Query: 332 FIASAKSD--EIPKGPKVTHKVSFDMKIGDD---NIGTIVIGLFGKTVPKTTENFFQLAQ 496
F++SA +D E+ K+T+KV FD+ IG+ N+G +VIGL+G VP+T ENF L
Sbjct: 64 FVSSATADPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCT 123
Query: 497 KPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
+G GYKGS FHRVIK+FMIQ +SIYG F+DENFKL H G G+
Sbjct: 124 GEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGV 179
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G VSMANAG + NGSQFFI TV TPWLDGR
Sbjct: 178 GVVSMANAGPNTNGSQFFICTVKTPWLDGR 207
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 106 bits (255), Expect = 2e-23
Identities = 51/97 (52%), Positives = 62/97 (63%)
Frame = +2
Query: 374 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 553
KV K FD+++G + G IVIGLFG+ VPKT +NF L +G GYKG FHR+IK+F
Sbjct: 63 KVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSFHRIIKDF 122
Query: 554 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
MIQ RSIYGE F+DENF LKH G G+
Sbjct: 123 MIQGGDFQNNNGTGGRSIYGECFDDENFTLKHTGPGV 159
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTV 725
G +SMANAG D NGSQFFI TV
Sbjct: 158 GVLSMANAGPDTNGSQFFICTV 179
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 101 bits (241), Expect = 8e-22
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Frame = +2
Query: 329 LFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEG 508
L +A AK + +VTHKV FD++I G +V+GLFGKTVPKT ENF L +G
Sbjct: 34 LALAQAKKSKADL-TEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKG 92
Query: 509 EG-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
G +KGS FHR+I +FMIQ SIYG +F DENFK+KH G GL
Sbjct: 93 TGKSGKALHFKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGL 151
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMANAG+D NGSQFFITTV T WLDG+
Sbjct: 150 GLLSMANAGRDTNGSQFFITTVTTSWLDGK 179
>09_06_0359 + 22508900-22509439
Length = 179
Score = 87.8 bits (208), Expect = 8e-18
Identities = 48/100 (48%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Frame = +2
Query: 386 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 544
KV FD+ IG G +V+ LF TVPKT ENF L +G G YKGS FHR+I
Sbjct: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRII 66
Query: 545 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
NFM Q SIYG+RF DENFKL+H G G+
Sbjct: 67 PNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGV 106
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMANAG + NGSQFFI T T WLDG+
Sbjct: 105 GVLSMANAGPNTNGSQFFICTTRTTWLDGK 134
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 87.4 bits (207), Expect = 1e-17
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = +2
Query: 374 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKF 532
KVT KV FD+ I G IV+GLFG TVPKT ENF + +G G YKG+ F
Sbjct: 37 KVTTKVFFDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPF 96
Query: 533 HRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
HR+I FMIQ SIYG F DENFK+ H GL
Sbjct: 97 HRIIPGFMIQGGDTVSGNGTGCDSIYGGMFPDENFKINHSAPGL 140
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMAN KD NGSQFFITTV LDG+
Sbjct: 139 GLLSMANYAKDTNGSQFFITTVKLTRLDGK 168
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 82.6 bits (195), Expect = 3e-16
Identities = 49/106 (46%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Frame = +2
Query: 362 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA---QKPEG--EGYKGS 526
P PK V FD+ IG G I + LF VPKT ENF Q + G +GYKG
Sbjct: 31 PPNPK-NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGC 89
Query: 527 KFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
+FHRVIK+FMIQ SIYG +F+DENF KH G GL
Sbjct: 90 QFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGL 135
>02_01_0160 + 1116160-1116678
Length = 172
Score = 78.2 bits (184), Expect = 7e-15
Identities = 44/100 (44%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Frame = +2
Query: 386 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 544
+V FDM +G G IV+ L+ K VP+T ENF L +G G YKGS FHRVI
Sbjct: 5 RVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVI 64
Query: 545 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
FM Q SIYGE+F DE FK KH G+
Sbjct: 65 PEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGI 104
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMANAG + NGSQFFI TV WLDG+
Sbjct: 103 GILSMANAGPNTNGSQFFICTVPCSWLDGK 132
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/100 (43%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Frame = +2
Query: 389 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRVI 544
V D+ IGD+ +V LF P+T ENF L G G YKGS FHRVI
Sbjct: 9 VFMDVSIGDEPDERMVFELFADVAPRTAENFRALCTGEMGIGQTSKKPLYYKGSLFHRVI 68
Query: 545 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
K FM Q SIYG FEDENF L+H GL
Sbjct: 69 KGFMAQGGDFSNGDGSGGESIYGGTFEDENFVLRHDERGL 108
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLD 743
G +SMANAG + NGSQFFIT LD
Sbjct: 107 GLLSMANAGPNTNGSQFFITFKHNSRLD 134
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 67.7 bits (158), Expect = 9e-12
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Frame = +2
Query: 371 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSK 529
P VT++V D++I +IG IVIGL+G VPKT NF L EG G YKGS+
Sbjct: 34 PAVTNRVYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSR 93
Query: 530 FHRVIKNFMIQ 562
FHR+I FMIQ
Sbjct: 94 FHRIIPGFMIQ 104
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3
Query: 666 VSMANAGKDXNGSQFFITTVXTPWLDG 746
++MAN+G D NGSQF+ITT+ T WLDG
Sbjct: 118 IAMANSGPDSNGSQFYITTIKTSWLDG 144
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 57.6 bits (133), Expect = 1e-08
Identities = 45/144 (31%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Frame = +2
Query: 299 GTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTEN 478
GT T A +A+ K +E + D+ IG D G IV+ L+ P+T EN
Sbjct: 7 GTTTAAAAAA--VAAGKEEEAEVVVVRNPRCYLDVSIGGDMEGRIVVELYASVAPRTAEN 64
Query: 479 FFQLAQKPEGEGY----------------------KGSKFHRVIKNFMIQXXXXXXXXXX 592
F L +G KGS HR++K FM+Q
Sbjct: 65 FRALCTGEKGVSAATGVPLHYKISLKAASVCTRWTKGSCIHRIVKGFMVQGGDITAGDGT 124
Query: 593 XXRSIYGERFEDENFKLKHYGAGL 664
SIYG FEDENF LKH G+
Sbjct: 125 GGESIYGLNFEDENFVLKHERKGM 148
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMANAG D NGSQFFITT TP LDG+
Sbjct: 147 GMLSMANAGPDTNGSQFFITTTRTPHLDGK 176
>10_01_0309 + 3417602-3418147
Length = 181
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Frame = +2
Query: 374 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--QKPEGEG-----YKGSKF 532
K +V D+ IG + +G +VI L VP T ENF +L ++ G YKGS F
Sbjct: 8 KSNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAF 67
Query: 533 HRVIKNFMIQXXXXXXXXXXXXRSIY---GERFEDENFKLKHYGAGL 664
HRV+ FM Q S F DE F +KH G G+
Sbjct: 68 HRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGV 114
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G VSMANAG + NGSQFFIT PWLDGR
Sbjct: 113 GVVSMANAGPNTNGSQFFITVDKAPWLDGR 142
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 413 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 592
+ ++G I ++ K PKT NF +L+++ Y FHR+IK+F++Q
Sbjct: 15 ETSMGAFTIEMYYKHAPKTCRNFLELSRRGY---YDNVIFHRIIKDFIVQ-GGDPTGTGR 70
Query: 593 XXRSIYGERFEDE-NFKLKHYGAGL 664
SIYG +FEDE +LKH GAG+
Sbjct: 71 GGESIYGAKFEDEIRPELKHTGAGI 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMANAG + NGSQFFIT LDG+
Sbjct: 94 GILSMANAGPNTNGSQFFITLAPCQSLDGK 123
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 518 KGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGL 664
+GS FHRVIK FM+Q SIYG +FEDENF LKH G+
Sbjct: 118 QGSCFHRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGM 166
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDGR 749
G +SMAN+G + NGSQFFITT TP LDG+
Sbjct: 165 GMLSMANSGPNTNGSQFFITTTRTPHLDGK 194
Score = 36.7 bits (81), Expect = 0.020
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 335 IASAKSDEIP-KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE 511
+ASA + E+ K P+ D+ IG + G IVI L+ VP+T ENF L +G
Sbjct: 13 VASAAAAEVEVKNPRCF----MDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGV 68
Query: 512 GYKGSKFHRVIKNF 553
G K H K+F
Sbjct: 69 GAVTGK-HLHYKDF 81
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +3
Query: 666 VSMANAGKDXNGSQFFITTVXTPWLDGR 749
+SMANAG + NGSQFFITTV TPWLD +
Sbjct: 582 LSMANAGPNTNGSQFFITTVATPWLDNK 609
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 419 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 598
++G I + L+ + PKT ENF + Y FHRVIK FMIQ
Sbjct: 503 SMGDIHLRLYPEECPKTVENFTTHCRNGY---YDNLIFHRVIKGFMIQ-TGDPLGDGTGG 558
Query: 599 RSIYGERFEDENFK-LKH 649
+SI+G FEDE K L+H
Sbjct: 559 QSIWGREFEDEFHKSLRH 576
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +2
Query: 359 IPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------- 514
+PK K H V FD+ IG I LF VPKTTENF L G G
Sbjct: 1 MPKAKKNPH-VFFDIAIGGRAAERITFELFADVVPKTTENFRALCTGERGLGVSTQKPLY 59
Query: 515 YKGSKFHRVIKNFMIQ 562
+KG+ HR++K FM Q
Sbjct: 60 FKGTNMHRILKGFMAQ 75
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 45.6 bits (103), Expect = 4e-05
Identities = 38/104 (36%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +2
Query: 356 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFH 535
++ K PK V GD N+ L P+T ENF E Y G FH
Sbjct: 336 KVEKNPKKKGYVQLHTTHGDLNLE-----LHCDITPRTCENFLTHC---ENGYYNGLIFH 387
Query: 536 RVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE-NFKLKHYGAGL 664
R IKNFMIQ SI+G+ F+DE N KL H G G+
Sbjct: 388 RSIKNFMIQ-GGDPTGTGSGGESIWGKPFKDELNSKLIHSGRGV 430
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLD 743
G VSMAN+G NGSQFFI P L+
Sbjct: 429 GVVSMANSGPHTNGSQFFILYKSAPHLN 456
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 419 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 598
N+G I +F P+T ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEVFCDQAPRTAENFLALCASGY---YDGTIFHRNIKGFMIQ-GGDPTGTGKGG 63
Query: 599 RSIYGERFEDE-NFKLKHYGAGL 664
SI+G++F DE LKH G+
Sbjct: 64 TSIWGKKFADEFRESLKHNARGV 86
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFITTVXTPWLDG 746
G +SMAN+G + NGSQFFIT P L+G
Sbjct: 85 GVMSMANSGPNTNGSQFFITYAKQPHLNG 113
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/69 (42%), Positives = 35/69 (50%)
Frame = +2
Query: 425 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 604
G + I L+ K PK NF QL EG Y G+ FHRVIK+F++Q S
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCL--EGY-YDGTLFHRVIKSFLVQ-GGDPTGSGTGGES 77
Query: 605 IYGERFEDE 631
IYG F DE
Sbjct: 78 IYGAPFADE 86
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 660 GWVSMANAGKDX-NGSQFFITTVXTPWLD 743
G V+ ANAG NGSQFFI+ WLD
Sbjct: 97 GLVACANAGTPHSNGSQFFISLDRCDWLD 125
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 419 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 562
++G I + L P TT+NF +L + + Y G FH+V K+F+ Q
Sbjct: 8 SVGDIEVDLHTDMCPLTTKNFLKLCKM---KYYNGCLFHKVEKDFLAQ 52
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 660 GWVSMANAGKDXNGSQFFIT 719
G ++MA+AG++ N SQF+IT
Sbjct: 92 GTIAMASAGENCNASQFYIT 111
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 657 LGWVSMANAGKDXNGSQFFIT 719
+G ++MA+AG++ N SQF+IT
Sbjct: 121 MGTIAMASAGENCNASQFYIT 141
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 634 VFIFKTFTIYTAPSSSITLGKITTLDHEIFN---YSVELAPFVPLPLRFLS 491
V + TI A + S+ T LD ++FN +++ PFVPL L+ L+
Sbjct: 132 VVLLNLVTIVFASNISVVKEAETMLDPDLFNVLRFTISAIPFVPLLLKALN 182
>10_01_0310 + 3425099-3425218
Length = 39
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 425 GTIVIGLFGKTVPKTTENF 481
G++VI F VPKTTENF
Sbjct: 8 GSVVIEQFADKVPKTTENF 26
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 425 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 562
G+I I ++ + F L + +KG F VIKNF+IQ
Sbjct: 103 GSITIEIYKDASADVVDRFVSLCKSNH---FKGMPFRHVIKNFVIQ 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,001,718
Number of Sequences: 37544
Number of extensions: 333979
Number of successful extensions: 555
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -