Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2236
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    87   3e-18
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    86   4e-18
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    32   0.063
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.1  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.1  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.3  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 40/77 (51%), Positives = 54/77 (70%)
 Frame = +3

Query: 255 RVRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPY 434
           + RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 435 MFVSPATSXXVXXEXEK 485
           +  SP+    +  E E+
Sbjct: 140 L-SSPSHIEIIVAEEEE 155



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
 Frame = +2

Query: 92  LRTHMRPQ----WQSGKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 256
           LRTH +      +    M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 22  LRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +1

Query: 16  MGRYSREPDNPAKSCKARGSNLRVHFKNXYETAMAI 123
           M RYS  P    K  KARG+ LR HFKN  E A  I
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTI 36


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 40/77 (51%), Positives = 53/77 (68%)
 Frame = +3

Query: 255 RVRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPY 434
           + RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 435 MFVSPATSXXVXXEXEK 485
           +  SP+    +  E E+
Sbjct: 140 L-SSPSHIEIIVAEEEE 155



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
 Frame = +2

Query: 92  LRTHMRPQ----WQSGKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 256
           LRTH +      +    M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 22  LRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +1

Query: 16  MGRYSREPDNPAKSCKARGSNLRVHFKNXYETAMAI 123
           M RYS  P    K  KARG+ LR HFKN  E A  I
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTI 36


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 231 KQSSLAQHRVRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYR 410
           K  S +QH++  PK SA  LL +LR+      N TL++  +  D I      C +R+  R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208

Query: 411 A 413
           +
Sbjct: 209 S 209


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 254 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 171
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 249 QHRVRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 359
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 333 FCCQRLIQRSSITARGI------RRISWASEPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 172
           FC   LI   S  A+ +      R ++  +   ++PN  A   R  PP K++N I + F 
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181

Query: 171 IT 166
            T
Sbjct: 182 AT 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,566
Number of Sequences: 5004
Number of extensions: 40040
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)