Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2236
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...    95   4e-20
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...    91   5e-19
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   3.3  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   3.3  
02_04_0493 + 23435395-23436003                                         28   5.7  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 48/88 (54%), Positives = 57/88 (64%)
 Frame = +3

Query: 261 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPYMF 440
           RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN A   RRRTYRAHGRI PYM 
Sbjct: 95  RWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYM- 153

Query: 441 VSPATSXXVXXEXEKCCRQGXPLLMMPQ 524
            SP     +  E E+  ++     + P+
Sbjct: 154 SSPCHVELILSEKEEAVKKEPETTIAPR 181



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 128 KMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 238
           K+PL +A RYL++VI  K+ IPFRR+ GGVGR AQ K
Sbjct: 50  KLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVK 86



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = +1

Query: 16 MGRYSREPDNPAKSCKARGSNLRVHFK 96
          MG+YS EP NP KS KA G +LRVHFK
Sbjct: 1  MGKYSTEPSNPTKSAKAMGRDLRVHFK 27


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 46/75 (61%), Positives = 52/75 (69%)
 Frame = +3

Query: 261 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPYMF 440
           RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN A   RRRTYRAHGRI PYM 
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM- 141

Query: 441 VSPATSXXVXXEXEK 485
            SP     +  E E+
Sbjct: 142 SSPCHIELILSEKEE 156



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +1

Query: 16  MGRYSREPDNPAKSCKARGSNLRVHFKNXYETAMAIRE 129
           M +YSRE +NP KS KA G +LRVHFKN  ETA AIR+
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRK 38



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +2

Query: 128 KMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 238
           K+PL +A RYL++VI  K+ IPFRR+ GGVGR AQAK
Sbjct: 38  KLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 333  FCCQRLIQRSSITARGIRRISWASEPCVVPNCFA*AQRPTPP 208
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 270  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNXAPCLR 395
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>02_04_0493 + 23435395-23436003
          Length = 202

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 210 PLKRRNGIHSFFSITFLR*RTARRSGIFPDCHCGLIXVLKVNTEV 76
           P + RN  H    I+FLR  TA     + + H G + VL+ + EV
Sbjct: 154 PYQYRNPAHRDAIISFLRKFTAIDGKFYTELHTGNVGVLEFSPEV 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,664
Number of Sequences: 37544
Number of extensions: 313293
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)