Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2236
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...    94   7e-20
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    76   3e-14
AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b prote...    27   8.9  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 48/74 (64%), Positives = 53/74 (71%)
 Frame = +3

Query: 261 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPYMF 440
           RWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V  A  LRRRTYRAHGRI PYM 
Sbjct: 84  RWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYM- 142

Query: 441 VSPATSXXVXXEXE 482
            SP     +  E E
Sbjct: 143 SSPCHIEVILAEKE 156



 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +2

Query: 131 MPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 259
           MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 41  MPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +1

Query: 25  YSREPDNPAKSCKARGSNLRVHFKNXYETAMAIR 126
           YSR P+N  KSCKARGS+LRVHFKN +E AMA+R
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALR 39


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/64 (62%), Positives = 44/64 (68%)
 Frame = +3

Query: 291 LQLLRNAESNADNKTLDVDRLVIDHIQVNXAPCLRRRTYRAHGRIXPYMFVSPATSXXVX 470
           L LL+NAESNA+ K LDVD LVI+HI V  A  LRRRTYRAHGRI PYM  SP     + 
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYM-SSPCHIEVIL 124

Query: 471 XEXE 482
            E E
Sbjct: 125 AEKE 128



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +1

Query: 25  YSREPDNPAKSCKARGSNLRVHFKNXYETAMAIR 126
           YSR P+N  KSCKARGS+LRVHFKN +E AMA+R
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALR 39



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 131 MPLRRAVRYLKNVIEKKECIPFRRF 205
           MPLRRA  +L +V E KE +PFRRF
Sbjct: 41  MPLRRAQAFLNHVKEHKEIVPFRRF 65


>AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b protein
           protein 54 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 271 LGQRTLCCAKLLCLSTATNAAVEATEWNTLFLFNH 167
           + Q+T    + LC++ ++   +E T+WN   + NH
Sbjct: 35  VSQKTKDFTRELCIAGSSQLFIELTDWNEYNISNH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,549
Number of Sequences: 27780
Number of extensions: 248246
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)