Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2235
(826 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 369 e-101
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 360 3e-98
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 204 1e-90
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 317 2e-85
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 285 9e-76
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 180 2e-73
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 269 6e-71
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 256 5e-67
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 248 1e-64
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 237 2e-61
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 225 8e-58
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 167 3e-40
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 126 5e-28
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 125 2e-27
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 124 3e-27
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 124 4e-27
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 119 1e-25
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 116 5e-25
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 112 9e-24
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 111 2e-23
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 109 6e-23
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 108 1e-22
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 106 8e-22
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 105 1e-21
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 105 2e-21
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 105 2e-21
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 102 1e-20
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 101 3e-20
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 98 3e-19
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 90 5e-17
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 86 1e-15
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 85 3e-15
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 84 4e-15
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 59 2e-07
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.057
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.40
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 5.0
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 8.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 369 bits (907), Expect = e-101
Identities = 168/209 (80%), Positives = 186/209 (88%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 7 KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 67 QRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
K+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGG
Sbjct: 127 KKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHG 627
RNLGRVGT+V+RERHPGSFDIVHI G
Sbjct: 187 RNLGRVGTVVNRERHPGSFDIVHIKDSQG 215
Score = 40.7 bits (91), Expect = 0.043
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H +GH FAT L NVFIIGKG K YI
Sbjct: 209 HIKDSQGHVFATRLTNVFIIGKGNKPYI 236
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 360 bits (885), Expect = 3e-98
Identities = 160/215 (74%), Positives = 187/215 (86%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV
Sbjct: 67 QRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG
Sbjct: 127 RKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHGDTPSPR 645
NLGR+G I +RERHPGSFD+VH+ +G++ + R
Sbjct: 187 ANLGRIGVITNRERHPGSFDVVHVKDANGNSFATR 221
Score = 35.9 bits (79), Expect = 1.2
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H G++FAT L+N+F+IGKG K +I
Sbjct: 209 HVKDANGNSFATRLSNIFVIGKGNKPWI 236
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 204 bits (498), Expect(2) = 1e-90
Identities = 94/114 (82%), Positives = 102/114 (89%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 342
QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 67 QRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 153 bits (370), Expect(2) = 1e-90
Identities = 63/102 (61%), Positives = 84/102 (82%)
Frame = +1
Query: 340 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 519
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 520 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIXGLHGDTPSPR 645
+CM+TGG NLGR+G I +RERHPGSFD+VH+ G++ + R
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATR 253
Score = 35.1 bits (77), Expect = 2.2
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H G++FAT L+N+F+IGKG K ++
Sbjct: 241 HVKDSTGNSFATRLSNIFVIGKGNKPWV 268
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 317 bits (778), Expect = 2e-85
Identities = 143/204 (70%), Positives = 170/204 (83%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGG
Sbjct: 127 RSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHI 612
RN GRVG I +RE+H GSF+ +HI
Sbjct: 187 RNRGRVGVIKNREKHKGSFETIHI 210
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H GH FAT L NV+ IGKGTK ++
Sbjct: 209 HIQDSTGHEFATRLGNVYTIGKGTKPWV 236
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 285 bits (699), Expect = 9e-76
Identities = 127/214 (59%), Positives = 162/214 (75%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK++
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIE 127
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
+ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG
Sbjct: 128 KRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGN 187
Query: 544 NLGRVGTIVSRERHPGSFDIVHIXGLHGDTPSPR 645
+GRVG IV RE HPGSF+IVHI G+T + R
Sbjct: 188 GMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTR 221
Score = 37.9 bits (84), Expect = 0.30
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H +G+TF T LNNVF+IGKGT+ +
Sbjct: 209 HIKDAKGNTFTTRLNNVFVIGKGTETLV 236
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 180 bits (439), Expect(2) = 2e-73
Identities = 76/118 (64%), Positives = 97/118 (82%)
Frame = +1
Query: 292 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 471
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 472 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIXGLHGDTPSPR 645
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+ +G++ + R
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATR 193
Score = 118 bits (285), Expect(2) = 2e-73
Identities = 54/69 (78%), Positives = 59/69 (85%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRM 66
Query: 181 QRLIKVDGK 207
Q IK+DGK
Sbjct: 67 QHFIKMDGK 75
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 269 bits (659), Expect = 6e-71
Identities = 127/204 (62%), Positives = 156/204 (76%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 18 QHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICM 76
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK+
Sbjct: 77 QWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKM 136
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG
Sbjct: 137 RKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGG 195
Query: 541 RNLGRVGTIVSRERHPGSFDIVHI 612
N GR+G I +RERHP SFD H+
Sbjct: 196 GNWGRIGVITNRERHPVSFDTFHV 219
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 256 bits (627), Expect = 5e-67
Identities = 116/208 (55%), Positives = 152/208 (73%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVN 141
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
+ G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G
Sbjct: 142 QFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGG 201
Query: 544 NLGRVGTIVSRERHPGSFDIVHIXGLHG 627
N+GRVGTI E+ SFDIVH+ G
Sbjct: 202 NVGRVGTIQKIEKQMASFDIVHLKDTSG 229
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 248 bits (608), Expect = 1e-64
Identities = 113/211 (53%), Positives = 153/211 (72%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K
Sbjct: 7 KHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILK 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV
Sbjct: 67 KNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G
Sbjct: 127 IRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHGDT 633
N+GR+G ++ GS IV + +G +
Sbjct: 187 SNIGRIGVFINTIGGQGSDSIVCLKDFNGSS 217
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 237 bits (581), Expect = 2e-61
Identities = 113/209 (54%), Positives = 138/209 (66%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++
Sbjct: 4 KHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILR 63
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 64 QGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKV 123
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG
Sbjct: 124 VNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGG 183
Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHG 627
N GR+G IV E HPG+F+I H+ G
Sbjct: 184 ANRGRIGEIVKVECHPGAFNIAHLKDASG 212
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 225 bits (551), Expect = 8e-58
Identities = 119/246 (48%), Positives = 153/246 (62%), Gaps = 31/246 (12%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHK 93
KHLKR+NAPK+WML+ KL +Y A RPS GPHK
Sbjct: 88 KHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHK 147
Query: 94 LRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 267
LRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV IEKT
Sbjct: 148 LRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKT 207
Query: 268 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 447
++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK
Sbjct: 208 DQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIK 267
Query: 448 VNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIXGLHG 627
+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSFDI H+ G
Sbjct: 268 IGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKG 327
Query: 628 DTPSPR 645
+ + R
Sbjct: 328 NAFATR 333
Score = 33.9 bits (74), Expect = 5.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H +G+ FAT L N+F++G+G K++I
Sbjct: 321 HVKDAKGNAFATRLGNIFVLGQGKKSWI 348
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 167 bits (406), Expect = 3e-40
Identities = 81/188 (43%), Positives = 123/188 (65%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVT 127
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
+ + +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+
Sbjct: 128 KKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGK 186
Query: 544 NLGRVGTI 567
GRVG I
Sbjct: 187 ARGRVGVI 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 126 bits (305), Expect = 5e-28
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 177
+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 10 RHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69
Query: 178 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 357
+ I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C+
Sbjct: 70 TRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCR 129
Query: 358 VKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMD 495
+K + HDG+ + DP + V DS+ L++ + K++D
Sbjct: 130 IKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVD 189
Query: 496 FIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIXGLHGD 630
I FE G GR+ G VG +V + G D++ + GD
Sbjct: 190 HIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGD 235
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 125 bits (301), Expect = 2e-27
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 9/203 (4%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 8 RRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLIS 67
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCK 357
+ +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +
Sbjct: 68 EGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVR 126
Query: 358 VKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFES 513
++ T L HDGR I R DP + + D++ + + +I IKF
Sbjct: 127 IENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGE 186
Query: 514 GNLCMITGGRNLGRVGTIVSRER 582
G + +I GGRN+GRVG + S ++
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQK 209
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 124 bits (299), Expect = 3e-27
Identities = 63/189 (33%), Positives = 100/189 (52%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 8 KHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIIN 67
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 68 SGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKI 125
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+T + HDG+ + + V D I L + +I + + + G +ITGG
Sbjct: 126 VNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGG 185
Query: 541 RNLGRVGTI 567
++ G +GT+
Sbjct: 186 KHTGELGTV 194
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 124 bits (298), Expect = 4e-27
Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 10/220 (4%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 8 KHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQ 67
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+
Sbjct: 68 TGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKI 125
Query: 361 --KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 510
K V G N+ L HDGR + + + K DS+ + I I + F
Sbjct: 126 VNKTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFG 183
Query: 511 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIXGLHGD 630
G L ITGG+++G IV E DIV + G+
Sbjct: 184 EGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGE 223
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 119 bits (286), Expect = 1e-25
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL ++
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQI 129
Query: 361 KRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESG 516
+R T HDGR + Y + K D++ + I I+ + FE G
Sbjct: 130 RRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVG 189
Query: 517 NLCMITGGRNLGRVGTI 567
L ++ GRN+G +G I
Sbjct: 190 TLAIVVDGRNVGFMGRI 206
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 116 bits (280), Expect = 5e-25
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Frame = +1
Query: 4 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 361 KRVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 531
+ L HDGR T IK DS+ D+ I I + G ++
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 532 TGGRNLGRVGTI 567
G N+G GT+
Sbjct: 183 IHGSNVGFSGTL 194
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 112 bits (270), Expect = 9e-24
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 364 RVATGPKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 534
L HDGR I + + S+ +++ K+MD+ + +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAF 182
Query: 535 GGRNLGRVGTIVS 573
G N+GR GT+++
Sbjct: 183 NGVNVGRHGTLIN 195
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 111 bits (267), Expect = 2e-23
Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 1/206 (0%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
T L +DG I + DS+ L I ++ +KFE GNL M+ GG+
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 544 NLGRVGTIVS-RERHPGSFDIVHIXG 618
+ G G I+ RE + V I G
Sbjct: 181 HSGETGKIMEIREVKSSRHNTVMISG 206
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 109 bits (263), Expect = 6e-23
Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 1/201 (0%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 190 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 370 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 549
P N L THDGRT D KV D + + KI + IK + GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 550 GRVGTIVSRERHPG-SFDIVH 609
+ GTI E G S ++VH
Sbjct: 184 NQTGTISKIEAKEGSSANLVH 204
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 108 bits (260), Expect = 1e-22
Identities = 60/188 (31%), Positives = 95/188 (50%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
L HDG T+ + K DS+ L + KI + G+L M+T G+
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGK 181
Query: 544 NLGRVGTI 567
+ G +G +
Sbjct: 182 HSGEIGKV 189
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 106 bits (254), Expect = 8e-22
Identities = 56/209 (26%), Positives = 102/209 (48%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KH KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 7 KHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVK 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
+ V+GK +P MD +S N+ +R++ G+ T++ I E K+CKV
Sbjct: 67 TGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
++ ++T D R ++ IKV DS+ + +I+ +KFE G+LC+IT G
Sbjct: 127 IKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHG 627
++LG + I + ++H+ + G
Sbjct: 187 KHLGTIAVIKEIRKTKSLRKMIHLEKIDG 215
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 105 bits (253), Expect = 1e-21
Identities = 57/188 (30%), Positives = 95/188 (50%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 543
+ + + +DG I DSI L + K++ IK+E GNL MI GG
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGS 181
Query: 544 NLGRVGTI 567
+ G VG+I
Sbjct: 182 HAGEVGSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 105 bits (251), Expect = 2e-21
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 1/193 (0%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+T + HDGR I D L D++ + + + F G +TGG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 541 RNLGRVGTIVSRE 579
++G +VSR+
Sbjct: 183 SHIGITAKVVSRD 195
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 105 bits (251), Expect = 2e-21
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 5/195 (2%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLC 525
+ T L G + D K DS+ + + T +I+D + GN+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVA 180
Query: 526 MITGGRNLGRVGTIV 570
MI GG++ G+VG IV
Sbjct: 181 MIVGGKHSGKVGRIV 195
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 102 bits (244), Expect = 1e-20
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 177
+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLL 66
Query: 178 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 357
+ VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K
Sbjct: 67 NNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGK 126
Query: 358 -VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 534
+++V+ + Y +T DGRT D K + + +I KI + I E I
Sbjct: 127 IIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYII 184
Query: 535 GGRNLGRVGTI 567
G++ GR+G I
Sbjct: 185 RGKHTGRIGVI 195
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 101 bits (241), Expect = 3e-20
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 1/191 (0%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 190 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 366
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 367 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 546
G + L HDG+TI I +D + + I +I + +K G+ ITGG +
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSH 185
Query: 547 LGRVGTIVSRE 579
+G + TI S E
Sbjct: 186 VGELATIKSIE 196
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 97.9 bits (233), Expect = 3e-19
Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 5/193 (2%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 364 RVATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCM 528
T V L DGR I + L + N ++++++ KI + G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 529 ITGGRNLGRVGTI 567
I GGRN G G I
Sbjct: 183 IIGGRNAGLHGKI 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 90.2 bits (214), Expect = 5e-17
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 1/202 (0%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 190 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 370 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 549
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 550 GRVGTIVSRE-RHPGSFDIVHI 612
G + TI S E + ++VH+
Sbjct: 184 GEIATIKSIEIKSSSGENMVHM 205
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 85.8 bits (203), Expect = 1e-15
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Frame = +1
Query: 4 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 183
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 184 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 363
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 364 RVATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
L HDG T I D DSI + +++ ++E G L G
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182
Query: 541 RNLGRVGTIVSRERHPGS 594
+ G VG + + PGS
Sbjct: 183 AHAGEVGEVEEIQVTPGS 200
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 84.6 bits (200), Expect = 3e-15
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Frame = +1
Query: 10 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 189
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 190 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 369
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 370 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGG 540
T + G + K DS+ + IA + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 541 RNLGRVGTIV 570
++ + G +V
Sbjct: 183 QHTMKTGKLV 192
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 84.2 bits (199), Expect = 4e-15
Identities = 53/189 (28%), Positives = 83/189 (43%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ + HDGR++ D + V DS + + KI+ + E G ++T G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 541 RNLGRVGTI 567
N G GTI
Sbjct: 187 TNAGSTGTI 195
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 58.8 bits (136), Expect = 2e-07
Identities = 38/122 (31%), Positives = 61/122 (50%)
Frame = -2
Query: 609 VHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFDKWVW 430
VHN EG + LA D V + DH Q ++LD + +L +V +G+ D +
Sbjct: 72 VHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIR 131
Query: 429 VADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*D 250
V +GAA+++ R+ L QLVL D V ES+L ++D + FI+L + D
Sbjct: 132 VTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGD 191
Query: 249 NI 244
++
Sbjct: 192 DV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.057
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 76 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 255
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 256 IEKTNELFRLIYDVKG 303
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.40
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -2
Query: 276 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 97
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 96 QLV 88
Q +
Sbjct: 110 QFI 112
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 2.8
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -3
Query: 542 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 363
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 362 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 234
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 5.0
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 34 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 213
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 214 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 303
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 8.7
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 397 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 531
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,062,653
Number of Sequences: 1657284
Number of extensions: 18052265
Number of successful extensions: 52169
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 49655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52117
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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