Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2235
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 315 3e-86
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 310 7e-85
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 310 1e-84
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.1
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.5
01_01_0138 + 1253256-1253534,1253625-1254359 29 4.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 315 bits (773), Expect = 3e-86
Identities = 140/204 (68%), Positives = 168/204 (82%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 23 KHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILM 82
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV
Sbjct: 83 QRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKV 142
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGG
Sbjct: 143 RSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGG 202
Query: 541 RNLGRVGTIVSRERHPGSFDIVHI 612
RN GRVG I SRE+H GSF+ +H+
Sbjct: 203 RNTGRVGVIKSREKHKGSFETIHV 226
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H GH FAT + NVF IGK K ++
Sbjct: 225 HVEDALGHQFATRMGNVFTIGKERKPWV 252
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 310 bits (762), Expect = 7e-85
Identities = 136/204 (66%), Positives = 168/204 (82%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGG
Sbjct: 127 RSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHI 612
RN GRVG I +RE+H GSF+ +H+
Sbjct: 187 RNTGRVGVIKNREKHKGSFETIHV 210
Score = 35.5 bits (78), Expect = 0.052
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H GH FAT L NVF IGKG K ++
Sbjct: 209 HVEDALGHAFATRLGNVFTIGKGNKPWV 236
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 310 bits (760), Expect = 1e-84
Identities = 135/204 (66%), Positives = 168/204 (82%)
Frame = +1
Query: 1 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGG
Sbjct: 127 RSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGG 186
Query: 541 RNLGRVGTIVSRERHPGSFDIVHI 612
RN GRVG I +RE+H GSF+ +H+
Sbjct: 187 RNTGRVGVIKNREKHKGSFETIHV 210
Score = 35.1 bits (77), Expect = 0.068
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
H GH FAT L NVF IGKG K ++
Sbjct: 209 HVEDALGHQFATRLGNVFTIGKGNKPWV 236
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 127 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 26
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 140 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 12
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_01_0138 + 1253256-1253534,1253625-1254359
Length = 337
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 670 PIMNTLFNXVAKVCPRGVX*CAQCRRSRDVSRGTRWCPHAP 548
P ++T +CP + C DV+ R CPHAP
Sbjct: 129 PGLDTFLRAAKILCPNDLFGCRSYVAYHDVAAHQRACPHAP 169
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 24 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 188
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 277 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 381
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,531,585
Number of Sequences: 37544
Number of extensions: 535670
Number of successful extensions: 1567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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