Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2235
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   286   1e-77
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    30   1.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    30   1.7  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.1  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   9.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  286 bits (702), Expect = 1e-77
 Identities = 136/215 (63%), Positives = 162/215 (75%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ 
Sbjct: 6   KHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILT 65

Query: 181 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKV
Sbjct: 66  QRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKV 125

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 540
           K V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGG
Sbjct: 126 KSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGG 185

Query: 541 RNLGRVGTIVSRERHPGSFDIVHIXGLHGDTPSPR 645
           RN+GRVG I  RER PG+ DI+HI    G + + R
Sbjct: 186 RNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATR 220



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 609 HQXTPRGHTFATXLNNVFIIGKGTKAYI 692
           H     GH+FAT ++NVF+IGKG KA +
Sbjct: 208 HIKDSAGHSFATRISNVFVIGKGNKALV 235


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 LVYDHGRP*LGACGHHRVPRETSRLLRHCAHQXTPR 626
           LV+D GR  +G+    R  RETS+LL+H      P+
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQ 242


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 519 LVYDHGRP*LGACGHHRVPRETSRLLRHCAHQXTPR 626
           LV+D GR  +G+    R  RETS+LL+H      P+
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQ 191


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 792 CPXXPXCRXPXXRCAXPRSSAMVX-RMPX-PARQRKCTPSCPCR 667
           CP    C  P   C  P +   +  ++P  P   R C PSCPCR
Sbjct: 666 CPQPKICCQPAPVCLPPPTCCSINFKLPTIPICGRAC-PSCPCR 708


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 792 CPXXPXCRXPXXRCAXPRSSAMVX-RMPX-PARQRKCTPSCPCR 667
           CP    C  P   C  P +   +  ++P  P   R C PSCPCR
Sbjct: 311 CPQPKICCQPAPVCLPPPTCCSINFKLPTIPICGRAC-PSCPCR 353


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 792 CPXXPXCRXPXXRCAXPRSSAMVX-RMPX-PARQRKCTPSCPCR 667
           CP    C  P   C  P +   +  ++P  P   R C PSCPCR
Sbjct: 263 CPQPKICCQPAPVCLPPPTCCSINFKLPTIPICGRAC-PSCPCR 305


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 792  CPXXPXCRXPXXRCAXPRSSAMVX-RMPX-PARQRKCTPSCPCR 667
            CP    C  P   C  P +   +  ++P  P   R C PSCPCR
Sbjct: 991  CPQPKICCQPAPVCLPPPTCCSINFKLPTIPICGRAC-PSCPCR 1033


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 301 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 432
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 458  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 294
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 563 PSCPARDIPAPSTLCTSXDSTGTHLRHXVEQRVHN 667
           P+ P+ D+P P T   S D+T   L      R+H+
Sbjct: 83  PNQPSDDVPPPQTSQPSSDTTAEPLPSPAATRIHH 117


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 563 PSCPARDIPAPSTLCTSXDSTGTHLRHXVEQRVHN 667
           P+ P+ D+P P T   S D+T   L      R+H+
Sbjct: 83  PNQPSDDVPPPQTSQPSSDTTAEPLPSPAATRIHH 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,546
Number of Sequences: 27780
Number of extensions: 422216
Number of successful extensions: 1150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)