Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2231
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 87 1e-18
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 40 2e-04
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 29 0.46
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.4
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 27 1.4
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 27 1.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.9
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 27 2.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.5
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 26 3.3
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 3.3
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 4.3
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 5.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 7.5
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 7.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 10.0
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 87.4 bits (207), Expect = 1e-18
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Frame = +3
Query: 123 ELIEQNQDGLEYSSEEETEDIKDAAANLASKQ--RKDLIKVDHASLDYMQFRKSFYTEVN 296
E+I+ N + E ET + ++ LA+K+ +KD+I VDH+ ++Y F+K FY E
Sbjct: 327 EVIDPNANDDERMVISETLEEEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVEPE 386
Query: 297 ELARMTPEEVETYRTELEGIRVKGKGCPKPIRTWAHCGIS 416
EL ++P EV+ R L+GI+++G CPKP+ +W+ CG+S
Sbjct: 387 ELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLS 426
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 39.9 bits (89), Expect = 2e-04
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3
Query: 225 DLIKVDHASLDYMQFRKSFYTEVNELARMTPEEVETYRTELEGIRVKGKGCPKPIRTWAH 404
+L+K D + + F+K FY E + + EV YR E E I V G PKP+ T+
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKE-IVVHGLNVPKPVTTFEE 126
Query: 405 CGISKKV 425
G V
Sbjct: 127 AGFPNYV 133
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.46
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 123 ELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYMQFRKSFYTEVNEL 302
EL+ N+ LE +++ D+ ANLA+ R D+ A Y + + FY V
Sbjct: 381 ELVVSNKPPLEERKKQDFVDLGVVIANLAT-GRTDMDMSSAARAIYSTYSREFYKAVLYF 439
Query: 303 ARMTPEE 323
PE+
Sbjct: 440 VSEVPED 446
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.4
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRK-DLIKVDHASLDYMQ 266
+KK EQ+ K E E+ Q LE EE + K+ L +Q++ D K+ +
Sbjct: 638 RKKREEQRLKREQ-EKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREE 696
Query: 267 FRKSFYTEVNELARMTPEEVETYRTEL 347
K E ++ EE E R EL
Sbjct: 697 EEKRILEERKRREKLDKEEEERRRREL 723
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/97 (22%), Positives = 37/97 (38%)
Frame = +3
Query: 135 QNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYMQFRKSFYTEVNELARMT 314
++ GL + TE K A L Q K K+D + + + L M
Sbjct: 174 KSNSGLIQRLLQGTEQDKARAHELIQLQEKRAKKIDWDDVPWRE---------KPLEAMK 224
Query: 315 PEEVETYRTELEGIRVKGKGCPKPIRTWAHCGISKKV 425
P + + + I +KG P P+R W G+ ++
Sbjct: 225 PRDWRILKEDYN-ISIKGDDLPNPLRNWEEAGLPSEM 260
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 1.9
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYMQF 269
+ KV E KN+ + + +D L+ S + + AAA A K++K+ KV +
Sbjct: 72 ESKVNEGKNEAAKVVKEED-LKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKVGDSSV 130
Query: 270 RKSFYTEVNELARMTPEEVETYRTELEGIRVKGKG 374
K TE + MT EE EL+ + K G
Sbjct: 131 DK-IATE-ESVKSMTKEERAKLAAELKTLGNKAYG 163
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 111 KNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYMQFRKS 278
KNK +E ++ L S+E +D+K+ N+AS Q + I+ A D +Q + S
Sbjct: 996 KNKVSEVEVERNALLASNERLMDDLKNNGENIASLQTE--IEKKRAENDDLQSKLS 1049
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +3
Query: 120 GELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYM--QFRKSFYTEV 293
G L+E N+ + S ++ I D K +KDL+K HA L+ + RK +
Sbjct: 67 GVLLEDNEKSNDNKSNTSSK-IPDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRK 125
Query: 294 NELA-RMTPEEVETYRTELEGIRVKGKGC 377
N+++ T ET R + C
Sbjct: 126 NQMSNNSTTYHRETKRRNINAEASTSDNC 154
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 222 KDLIKVDHASLDYMQFRKSFYTEVNELARMTPEEVETYRTE 344
K L+K DH LDY + R SF + + +E + Y E
Sbjct: 144 KLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKDEKKLYEAE 184
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 558 PD-TATPRFNFLDNLLGXEHRLDLLIEISLHVXVVG 454
PD T+ P+FNFL+ LG H+ L ++ ++G
Sbjct: 133 PDQTSYPKFNFLNCTLGQVHKTGLGSSAAMITSLIG 168
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 424 TFLLIPQCAHVLIGFGQ-PFPLTRIPSNSVLYVSTSSGVI 308
T L PQ HV F Q P+ SNS+LY+ T S VI
Sbjct: 894 TTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 321 PLVSFLLV--HSLLCKMTS*IACSLN*H 244
PLV +LL HSL C+M + + C + H
Sbjct: 148 PLVQYLLSGQHSLSCRMNACVLCRMEQH 175
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 150 LEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLD 257
L+Y S D++D ANL + +L+ SLD
Sbjct: 922 LQYKSLCRARDVRDQLANLCERVEIELVTNSSESLD 957
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYSSEEETEDIK 188
K +V+E KN G + + D L+Y + E T DIK
Sbjct: 351 KAEVSETKNNGNSDKPSFDFLKYIT-ESTNDIK 382
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 188 RCRCKSCFQTEERLDQSRPC 247
R RC C ++++ D+ RPC
Sbjct: 339 RSRCSRCKKSKKGCDRQRPC 358
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 87 AVPVRITMPVPPVVGTLIIPLAW 19
A+P+ + P+PP++ L PL W
Sbjct: 11 ALPISLAYPLPPII--LTNPLTW 31
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYSSEEETEDIKDAAANLAS 212
K+ + + +NK ++I+ + GLE + +I D L S
Sbjct: 851 KRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELES 891
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,278
Number of Sequences: 5004
Number of extensions: 36907
Number of successful extensions: 155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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