Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2231
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0397 - 3509186-3510291,3510322-3512335 82 3e-16
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 77 1e-14
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 52 3e-07
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 48 5e-06
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 35 0.051
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803... 32 0.27
04_01_0308 + 4188726-4190351 30 1.1
04_01_0290 + 3843610-3843712,3844088-3846003 29 1.9
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 29 1.9
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944... 29 3.3
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 4.4
11_06_0380 + 22937941-22937984,22939375-22941481 27 7.7
07_03_1223 + 24985730-24985916,24986008-24986039,24986790-249868... 27 7.7
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 81.8 bits (193), Expect = 3e-16
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Frame = +3
Query: 108 QKNKGELIEQNQDGLEYSSEE------ETEDIKDAAANLASKQRKDLIKVDHASLDYMQF 269
+K G +I+ +Y+ +E E ED ++ + + + L VDH+ +DY F
Sbjct: 325 KKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHSKIDYQPF 384
Query: 270 RKSFYTEVNELARMTPEEVETYRTELEGIRVKGKGCPKPIRTWAHCGISKKV 425
RK+FY EV ++ +M EEV YR +LE ++V GK PKPI+TW G++ K+
Sbjct: 385 RKNFYIEVKDITKMAAEEVAAYRKQLE-LKVHGKDVPKPIKTWVQSGLTSKL 435
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Frame = +3
Query: 96 KVTEQKNKGELIEQNQDGLEYSSEEETE------DIKDAAANLASKQRKDLIKVDHASLD 257
K ++K G +++ + +Y +++ E D ++ + + + L VDH+ ++
Sbjct: 182 KKGQKKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIE 241
Query: 258 YMQFRKSFYTEVNELARMTPEEVETYRTELEGIRVKGKGCPKPIRTWAHCGISKKV 425
Y FRK+ Y EV ++ MT EEV TYR LE ++V GK PKPI+TW G++ K+
Sbjct: 242 YQPFRKNLYIEVKDITMMTGEEVATYRKNLE-LKVHGKDVPKPIKTWVQSGLTSKL 296
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +3
Query: 180 DIKDAAANLASKQRKDLIKVDHASLDYMQFRKSFYTEVNELARMTPEEVETYRTELEGIR 359
D D + K+ + + +DH++++Y F K FY E ++ M+ +EV Y L IR
Sbjct: 150 DSDDNPIVVDKKKIEPIPPLDHSTIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSL-AIR 208
Query: 360 VKGKGCPKPIRTWAHCG 410
V G P+PI+++A CG
Sbjct: 209 VSGFDVPRPIKSFADCG 225
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 ASLDYM-QFRKSFYTEVNELARMTPEEVETYRTELEGIRVKGKGCPKPIRTWAHCGISKK 422
A LD + +F K+FY E +A MT EEVE YR E I V+G+ PKP+R + G +
Sbjct: 43 ADLDGLPRFEKNFYVESPSVAGMTEEEVEAYRRRRE-ITVEGRDVPKPVREFRDVGFPEY 101
Query: 423 V 425
V
Sbjct: 102 V 102
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 34.7 bits (76), Expect = 0.051
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 228 LIKVDHASLDYMQFRKSFYTEVNELARMTPEEVETYRTELEGIRVKGKGCPKPIR 392
L K D SL + F K+FY E + M+ +V YR + + I V+G PKP+R
Sbjct: 105 LPKPDFRSL--IPFEKNFYVECPAVQAMSDMDVSQYRRQRD-ITVEGHDVPKPVR 156
>01_06_0735 -
31579201-31579208,31579402-31579467,31580222-31580307,
31580396-31580430,31580586-31580669,31580754-31580843,
31581267-31581304,31582042-31582108
Length = 157
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +3
Query: 132 EQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASL---DYMQFRKSFYTEVNEL 302
E+ +D +E S EEE+ED + A K + LI++++ +L ++ ++ + EL
Sbjct: 43 EEEEDDIEESEEEESEDESEGKAK--HKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTEL 100
Query: 303 ARMTPEEVETYRTELEGIRVKGKG 374
+R EE+E + ++++ +G
Sbjct: 101 SRREREEIEKQKAHERYMKLQEQG 124
>04_01_0308 + 4188726-4190351
Length = 541
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 87 PKKKVTEQKNKGELIEQNQD--GLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDY 260
PK+KV E + K +L+E+ D LE + E+ + A A + L++ A+
Sbjct: 330 PKRKVEEIQAKKDLVERENDKFQLEVLTGEQKQSKSKAKAKSLKVELSALVEAKEATAKA 389
Query: 261 MQFRKSFYTEVNELARMTPEEVETYRTELEGIRVK 365
K+ + E + EE++ + +EG + K
Sbjct: 390 FDVEKAKIMKELEDLKKKVEEIQGKKDLVEGEKDK 424
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYS--SEEETEDIKDAAANLASKQRKDLIKVDHASLDYM 263
K+KV E + +L+E D L S ++ + I + AN + L++ +
Sbjct: 381 KRKVVEIQTNKDLVEVGNDKLRLDVLSAQQKQSILEVEANNLKMELGALVEAKEVATKAF 440
Query: 264 QFRKSFYTEVNELARMTPEEVETYRTELEGIRVK 365
K+ T+ E + EE++ + +EG + K
Sbjct: 441 DAEKAKITKELEDVKRKMEEIQVKKDLVEGEKDK 474
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +3
Query: 120 GELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKDLIKVDHASLDYMQFRKSFYTEVNE 299
G+L+E +D + + TE++ +L K+ + L ++ F SF+ V +
Sbjct: 302 GDLLEVCRDCKYVNDDRRTEELIVYKVDLVEKELVKQKDFEGRVL-FIGFNSSFFLRVED 360
Query: 300 LARMTPEEVETYRTELEGIRVKGKGC 377
+TP V +E I + GC
Sbjct: 361 FPMLTPNSVYCTDDSMENIYSERFGC 386
>03_06_0631 +
35193737-35193906,35194010-35194076,35194237-35194426,
35194571-35194767
Length = 207
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 90 KKKVTEQKNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKD--LIKVDHASLDY 260
++K E+K + E+ E++++ E EEE + L S++ +D I+ HA+LDY
Sbjct: 15 EEKELEEKEEEEVEEEDENEEEEEEEEEDPQPYVPSRPLPSEEVRDGYSIREAHAALDY 73
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 93 KKVTEQKNKGELIEQNQDGLEYSSEEETE-DIKDAAANLASKQRKDLIKVDHASLDYMQF 269
KK+ +K E N++ E+E + K+ NLA K++ + +DH L+ +
Sbjct: 527 KKLNNEKKNLERWHDNEEKRLKDREDELDIKYKEQGENLALKEKSLIDNIDHQRLENEEL 586
Query: 270 RKSFYTEVNELARMTPEEVE 329
K ++ ++ E+E
Sbjct: 587 LKRERADLQRNLQLHRHELE 606
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 537 FNFLDNLLGXEHRLDLLIEISLHVXVVGVXEAESRLLV 424
F+ DN L LDL ++++ V VVG RLLV
Sbjct: 117 FSMEDNTLWMRRLLDLAAQVTMSVYVVGKQWKGDRLLV 154
>07_03_1223 +
24985730-24985916,24986008-24986039,24986790-24986879,
24987441-24987535,24987635-24987839,24988011-24988080,
24988564-24988642,24988859-24988926,24989114-24989202,
24989284-24989354,24989493-24989578,24989674-24989750
Length = 382
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 123 HPYFSAQ*PFFLAVPVRITMPVPPVVGTLIIPLAWS 16
HP A PF ++VPVRI +P P + + + L WS
Sbjct: 330 HPVVRANAPF-VSVPVRIPLPQPVAMSSAGVAL-WS 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,283
Number of Sequences: 37544
Number of extensions: 229761
Number of successful extensions: 739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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