Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2229
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    30   0.20 
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   2.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.8  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   5.8  

>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +1

Query: 13  LACTPVNVTCYWSLRQKDIPTCKHAMISVRQEYSHKMQIKRSISMASLNKTGRAVR 180
           + CTP+   C W+  +  + +  + ++ +    S K   K+ + + + NK  R +R
Sbjct: 89  ITCTPMGPICLWAPPEPVLRSVHNTLLKMGWSISEKKMKKKLLELLAKNKKRRTMR 144


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 24  PSKRYLLLEP-PTKRHTNVQTRDDFCSTGVLPQNANQTFDID 146
           P + YLL +P PTKR     TR  F +  VL +  NQT  ID
Sbjct: 244 PPEGYLLHDPRPTKRADRAGTR-GFRAPEVLFRCQNQTSSID 284


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 272  PPQYSTSTGSSVVAPS*KMSXSRSPVHSRHALTARP 165
            PP   ++ G   V+P+   + S+  +H    LT RP
Sbjct: 951  PPPLVSAAGGKFVSPAVSNNISKDDLHKTTGLTRRP 986


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 25/106 (23%), Positives = 43/106 (40%)
 Frame = -1

Query: 497 NSPTTTXRAVDAREDKALRHTVVXXSTWMYXXSXSSSNPXSXXXXXXXXXXALNGDEWKA 318
           +SPT+T   + +    +   +    S+ M   S  SS+P S          + +   + +
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSS 357

Query: 317 TSISGPREVTXGNQSPPQYSTSTGSSVVAPS*KMSXSRSPVHSRHA 180
           T+ S   + +    S    S+ST SS +  S   S SR    S H+
Sbjct: 358 TTSSS--KSSSSFSSTVSSSSSTSSSTLTSS-SSSSSRPASSSSHS 400


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  VNVTCYWSLRQKDIPT 75
           +N    WSLR KDIPT
Sbjct: 136 INRLSQWSLRYKDIPT 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,363
Number of Sequences: 5004
Number of extensions: 36820
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)