Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2229
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 35 0.051
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 31 0.83
03_01_0240 - 1862699-1864186,1864245-1864442 29 1.9
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264... 29 2.5
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 28 4.4
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 28 5.9
09_02_0021 - 3049920-3049979,3050094-3050163,3050349-3050710,305... 28 5.9
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 27 7.7
09_03_0069 - 12056342-12056521,12057274-12057540 27 7.7
01_06_1076 + 34359922-34360452 27 7.7
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 48 EPPTKRH-TNVQTRDDFCSTGVLPQNANQTFDIDGESQQDRPSGE 179
EP + H T Q+ D TG +P NQ+ +++ ++ Q+RP G+
Sbjct: 223 EPTEENHPTGSQSATDNVETGKVPPTGNQSAEVETDAHQERPIGD 267
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -1
Query: 332 DEWKATSISGPREVTXGNQSPPQYSTSTGSSVVAPS*KMSXSRSPVHS----RHALTARP 165
DE+ AT + R + GN+ P + + SS+ PS + RSP+ + R ++
Sbjct: 143 DEFSATDVF--RIIDFGNRDAPYEANRSSSSLAHPSSESDEERSPIDTSSLKRSRGLSKA 200
Query: 164 VLLRLAIDI 138
LRL I+I
Sbjct: 201 AFLRLQIEI 209
>03_01_0240 - 1862699-1864186,1864245-1864442
Length = 561
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 40 CYWSLRQKDIPTCKHAMISVRQEYSHKM----QIKRSISMASLNKTGRAV 177
C W +P + A I Q H+M IK ++MAS+ GRAV
Sbjct: 349 CVWRPEWDALPLAERARIKALQGVQHQMLQDVDIKDPVTMASVPSDGRAV 398
>12_01_0344 +
2647044-2647238,2647452-2647553,2647789-2647911,
2648066-2648183,2649022-2649347
Length = 287
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 254 WWSTAAGTGCRVSPREVQRCWSLST 328
WWS AA C++ + R W LS+
Sbjct: 235 WWSKAASNACQLQSLPLNRNWRLSS 259
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -1
Query: 317 TSISGPREVTXGNQSPPQYSTSTGSSVVAPS*KMSXSRSPVHSRHALTARPVLLRLAIDI 138
TS+ G + GN PQY S +VV P + RH A+P L + I
Sbjct: 42 TSLRGRHDSAIGNFGVPQYGGSMAGTVVYPKDNADACEAYDGDRH-FRAKPGALPNFLLI 100
Query: 137 ERLICI 120
+R C+
Sbjct: 101 DRGNCL 106
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 505 DSRTVRRQRDEQSTRERTRRS 443
D R ++RQR +QS RE RRS
Sbjct: 292 DERELKRQRRKQSNRESARRS 312
>09_02_0021 -
3049920-3049979,3050094-3050163,3050349-3050710,
3051270-3051323
Length = 181
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 31 NVTCYWSLRQKDIPTCKHAMISVRQEYSHKMQIKRSISMASLNKTGRAVR 180
++TC+ L +D P K A+ VR + ++ S + L +T RA R
Sbjct: 55 DLTCHHPLYHRDAPDEKAAIEEVRPTLDREKEVSPSWPIEHLRRTTRADR 104
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 197 VHSRHALTARPVLLRLAIDIERLICIL 117
VH +H + P LL+ A+D+ R +C L
Sbjct: 368 VHKQHNVLDLPTLLKFAVDVCRGMCYL 394
>09_03_0069 - 12056342-12056521,12057274-12057540
Length = 148
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 260 STAAGTGCRVSPREVQRCWSLSTRRRSALHCXPPPRXPH 376
+ AA TGC + RC + R C PP PH
Sbjct: 109 AVAAATGCAAADARGSRCSNDPNLPRRIRACGPPSIKPH 147
>01_06_1076 + 34359922-34360452
Length = 176
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 387 ESXEWGXRGGGXQWSAE-RRRVESDQHLWTSRGDTRQP 277
E+ E GGG + SA+ RRR W+SRG RQP
Sbjct: 54 EASERMGGGGGDELSAQPRRRPRGGSRRWSSRG--RQP 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,646,704
Number of Sequences: 37544
Number of extensions: 330766
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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