Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2229
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical pr...    35   0.035
AL110484-4|CAB54396.2|  425|Caenorhabditis elegans Hypothetical ...    35   0.046
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    34   0.061
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    33   0.11 
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    31   0.43 
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    30   1.3  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    29   1.7  
Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   3.0  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   4.0  
AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical ...    28   4.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical...    28   5.3  
AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    28   5.3  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    27   7.0  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical
           protein F56H6.8 protein.
          Length = 408

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHSSPF 339
           D +  YDG +T+ P+L  Y G  +    TS G  M+V F S  F
Sbjct: 350 DYVTIYDGPSTESPILGRYSGNMYEFTRTSSGSTMVVTFKSDGF 393


>AL110484-4|CAB54396.2|  425|Caenorhabditis elegans Hypothetical
           protein Y38E10A.5 protein.
          Length = 425

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAF 324
           D +  YDG +T+DPV+  Y G  +   V S G +MLV F
Sbjct: 360 DVVTVYDGDSTNDPVIGVYAGSFYPFTVISTGNKMLVTF 398


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 196 TGERDXLIFYDGATTDDPVLVEYCGGDWLP-XVTSRGPEMLVAFHS 330
           T   D +  YDG TTD P L   C G   P  +TS G  MLV F S
Sbjct: 352 TEANDVVTVYDGLTTDSPCL-RRCSGTQRPFALTSSGNTMLVTFTS 396


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 202 ERDXLIFYDGATTDDPVLVEYCG-GDWLPXVTSRGPEMLVAFHSS 333
           + D +  YDG +T  PV+ +Y G  +W     S G  MLV F S+
Sbjct: 351 KNDFVTLYDGDSTKSPVIAKYSGYYEWPFFNVSTGNSMLVTFRSN 395


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLP-XVTSRGPEMLVAFHS 330
           D +  YDG TT  P+L  + G +  P  + S G  MLV F S
Sbjct: 355 DYVTVYDGETTSSPMLGSFSGFNETPINLVSTGNTMLVTFRS 396


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAF 324
           D +  YDG T+  PVL +Y G       TS    MLV F
Sbjct: 360 DLVTIYDGETSSSPVLGKYGGNQSSLTFTSSRNNMLVTF 398


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 205 RDXLIFYDGATTDDPVLVEYCGGDWLP--XVTSRGPEMLVAFHS 330
           RD +  YDG TT  PVL     G        TS G  MLV F S
Sbjct: 350 RDFVTVYDGETTSSPVLAARLSGTIKGGFSYTSTGNNMLVTFTS 393


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 205 RDXLIFYDGATTDDPVLVEYCGGDWLP--XVTSRGPEMLVAFHS 330
           RD +  YDG TT  PVL     G        TS G  MLV F S
Sbjct: 350 RDFVTVYDGETTSSPVLAARLSGTIKGGFSYTSTGNNMLVTFTS 393


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 208 DXLIFYDGA-TTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHS 330
           D +  YDG   T + ++  +CG      +TS GPE+L+  H+
Sbjct: 866 DYIEIYDGPEATLERLVGRFCGDTSPEVITSTGPELLLIMHT 907


>Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical
           protein C54C8.7 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHS 330
           D +  YDG TT  P L  Y G      V+S    MLV F S
Sbjct: 357 DFVSVYDGPTTSSPSLGRYSGNIGSFYVSSSENNMLVTFTS 397


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = -1

Query: 338 NGDEWKATSISGP----REVTXGNQSP--PQYSTSTGSSVVAPS*KMSXSRSPVH 192
           NG     TS +GP     +V  G   P  PQY     S  V PS  M+    P+H
Sbjct: 298 NGPRPTTTSFNGPFFRLEQVNPGQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIH 352


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHS 330
           D ++ YDG +   P +  Y G      +TS G  M V F S
Sbjct: 350 DFVVVYDGDSASSPKMGNYSGSKNPFALTSTGNNMFVTFKS 390


>AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical
           protein W02G9.4 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHS 330
           D +  YDGA T  P++  Y G +    +TS    + + F S
Sbjct: 181 DVVSVYDGANTSAPLIGHYSGKNMPAPITSTSNTLYLCFSS 221


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -1

Query: 308 SGPREVTXGNQSPPQYSTSTGSSVVAPS*KMSXSRSPVHS 189
           S P   T  N +P   STS+GSS++  S   S S SPV S
Sbjct: 845 SSPAPSTSQNPNP---STSSGSSMITQSPYPSQSTSPVES 881


>AL132876-29|CAF31497.1|  840|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7b protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHSS 333
           D +  +DG T   P++ + CG      V S G  +L+ F+++
Sbjct: 239 DSVTIFDGPTPASPIIRKVCGLQQRMEVYSMGNSLLIHFNTT 280


>AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 208 DXLIFYDGATTDDPVLVEYCGGDWLPXVTSRGPEMLVAFHSS 333
           D +  +DG T   P++ + CG      V S G  +L+ F+++
Sbjct: 239 DSVTIFDGPTPASPIIRKVCGLQQRMEVYSMGNSLLIHFNTT 280


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 115 HKMQIKRSISMASLNKTGRAVRAWRECTGERDXLIFYDGAT-----TDDPVLVEYCGGDW 279
           ++++I ++ + +S N T      W EC G+++ +   D        T D VL +     W
Sbjct: 770 YQLRISQNGANSSTNSTIMFYTLWEECIGQKNIISIIDACLLAHLHTTDMVLYKNAKRGW 829

Query: 280 LPXVTS 297
           L  + S
Sbjct: 830 LKSILS 835


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
            protein protein 12 protein.
          Length = 862

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
 Frame = +1

Query: 46   WSLRQKDIPTCKHAMISVRQEYSHK-MQIKRSISMASLNKTGRAVRAWRECTGERDXLIF 222
            W LR  +        ++V QE +   +Q +   + +S + T      W+EC G+++ +  
Sbjct: 768  WFLRFAEACLGNPHQLAVMQEIAATFVQARLDDTSSSTDSTNMLYMLWKECIGQKNIIAI 827

Query: 223  YDGA-----TTDDPVLVEYCGGDWLPXV 291
             D          DP+       DWL  +
Sbjct: 828  ADACLLAHLRKSDPIKYLNVKRDWLESI 855


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 323 KATSISGPREVTXGNQSPPQYSTSTGSSVVAPS*KMSXSRSPVHSRHALTARPVLLRLA 147
           + +S   PR     + +P + + S  + VVAP+ +    ++PV S   +  +P + R A
Sbjct: 235 RPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAPVASVAPVKPKPFVARPA 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,184,938
Number of Sequences: 27780
Number of extensions: 235002
Number of successful extensions: 718
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)