Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2228
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   1.7  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    25   5.3  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   7.0  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   7.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   9.3  

>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 35  DISTRITCASGGGPGTVPQW 94
           D  T I CASG G G V  W
Sbjct: 73  DTKTLIDCASGSGDGAVKLW 92


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 243 RQRCMDLVSLETSDENEWVKARIVHXXIKY 332
           R + + +  LET     W  ARI H  +KY
Sbjct: 170 RDQVVSIKKLETQSGAPWGLARISHKSVKY 199


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 349 RPDVQMYFXLXWTIRALTHSFSSL 278
           + D+Q YF L W I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 255 MDLVSLETSDENEWVK 302
           MDLV   TSD++EW K
Sbjct: 105 MDLVLNHTSDQHEWFK 120


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 168 LYCQRISHGCFSVHTKK 118
           L+ QR+++ C+ +HTK+
Sbjct: 407 LHVQRVANQCWDIHTKR 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,753
Number of Sequences: 5004
Number of extensions: 42985
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)