Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2228
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0128 + 956953-957166,957657-958309                               32   0.25 
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   7.1  
12_01_0472 - 3681730-3682008,3682347-3682547                           27   9.4  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    27   9.4  
05_01_0100 + 670297-670525,671344-671559,671653-671758,671890-67...    27   9.4  

>07_01_0128 + 956953-957166,957657-958309
          Length = 288

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
 Frame = +3

Query: 249 RCMDLVSLETSDENEWVKARIVHXXIKYIWTSGR------LCDLQRMQPT*LTT*RNKTV 410
           RC + + L+T  +   V A   H  IKY+ T  +      LCD+Q+   T      N   
Sbjct: 46  RCQN-IDLDTILDG--VPAVRAHFPIKYLGTETKRRHATSLCDIQKRGKTLREGIEN--- 99

Query: 411 GSWTADLEXVGFPPPTVNXTTWSEXGXXWENXQ 509
           GSW  DL+  G  PPTV+    S+    WE  Q
Sbjct: 100 GSWIDDLDLSGTIPPTVDLI--SQLVSLWEATQ 130


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 295 HSFSSLVSRDTRSMQRCRQ*FLALNQS-SSTPRSAGSRH-EKKYPLLSA 155
           H+FSSLVS  T  +      + +++Q+ SST  S+ S H +   PLL++
Sbjct: 326 HNFSSLVSNKTADIPGSTLAYQSVSQAVSSTVASSSSAHMDMPVPLLAS 374


>12_01_0472 - 3681730-3682008,3682347-3682547
          Length = 159

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 102 GCVHWGTVPGPPPLAQVIRVLMS 34
           GC+H   +P PP L  +  V+MS
Sbjct: 32  GCIHNSLMPSPPLLLAIEEVMMS 54


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 108 APGCVHWGTVPGPPPLAQVIRVLMSSFSRCVQEPG 4
           +P C H+G+ PG       I  L+ S + CVQ  G
Sbjct: 316 SPSCTHFGSSPGHYNSPGRIMELLESAAFCVQPRG 350


>05_01_0100 +
           670297-670525,671344-671559,671653-671758,671890-672229,
           672555-672839,672911-673033,673361-673435
          Length = 457

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 470 RXVDGWWWEANXFKVSSPRTNRFISLGSKSGRLHPLKVTKTARCPNV 330
           R VD +  +A+  K+  P     +S   +S  LHPL+V    R P+V
Sbjct: 311 REVDLFIKQADGKKIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDV 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,476
Number of Sequences: 37544
Number of extensions: 335822
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)