Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2227
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.006
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.097
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 30 0.22
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.30
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.39
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.39
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.52
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 0.91
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 0.91
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.1
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 2.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.8
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 3.7
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.4
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 6.4
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 6.4
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 6.4
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 8.5
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 8.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.5
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.5 bits (78), Expect = 0.006
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 7/187 (3%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLL---SGRXXXXXXXXXXXX 222
++S P+ T S +T +A+++ + S SP PS++ + ST + G
Sbjct: 82 SASTPIITESTSSTSSASTTGSSS--SPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVP 139
Query: 223 XIGLNSS----PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTP 390
+S+ PP+ T + + LP + C TS++ +S STP
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTS---------IPPTGGSSSLSTP 190
Query: 391 VPASGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLTPSSPHPNDCQRFLRMP*T 570
+ + +PP T+ + SS + +P +S T S+ P L P T
Sbjct: 191 ITPT--VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPIT 248
Query: 571 GSSPGTS 591
+ P TS
Sbjct: 249 PTVPPTS 255
Score = 28.3 bits (60), Expect = 0.91
Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 6/140 (4%)
Frame = +1
Query: 73 TASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIGLNSSPPS 252
T + T TS+S+ S P S++ T S+ L G +++P +
Sbjct: 298 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPT-GNSTTPVT 356
Query: 253 PTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTP------VPASGPIP 414
PT P + S P P +TSS T TSTS P P + +P
Sbjct: 357 PTVP-PTSTSSTSTPPPPASTSS-TGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 415 PEDKDVTNNKKKQRTASSAP 474
P T++S P
Sbjct: 415 PTSSSTPLTTTNCTTSTSVP 434
Score = 25.8 bits (54), Expect = 4.8
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Frame = +1
Query: 235 NSSPPSPTHNVPAAMDSLPIPTPLCATSST-TAXXXXXXXXXXXXAFTSTSTPVPASGPI 411
NSSP T S+P PT T T T STS+ +S P+
Sbjct: 274 NSSPLPTTSTSCTTSTSIP-PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPL 332
Query: 412 PPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLTPSSPHP 534
P T + T +S +P +S T + P P
Sbjct: 333 PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +1
Query: 49 PNSSAPLKTAS------MKTTDNATSSSNVSMESPQPSSART 156
PN+S +KTAS +KT ++ SS+ S +P S++ T
Sbjct: 716 PNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTT 757
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLS 180
+SS P+ TAS+ T+ + S+S + SP P+++ T S++LS
Sbjct: 94 SSSTPI-TASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 30.3 bits (65), Expect = 0.22
Identities = 43/171 (25%), Positives = 61/171 (35%), Gaps = 6/171 (3%)
Frame = +1
Query: 46 APNSSAPLKTA--SMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXX 219
+P+S AP T S+ TT +A +V++ +P P +
Sbjct: 156 SPSSRAPSITPVDSVNTTTSAIQVPSVTLTAPAPLGVDQKISQDQKPDSWLTYNAQFAQN 215
Query: 220 XXIGLNSSPPSPTHNVPAAMDSLPIPTPLC----ATSSTTAXXXXXXXXXXXXAFTSTST 387
L S PSP PA ++P P P + SS T F S+ +
Sbjct: 216 SP-QLAPSIPSPMKLSPANQQAMP-PYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPS 273
Query: 388 PVPASGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLTPSSPHPND 540
P P SGPI + ++S P L SS PS P PN+
Sbjct: 274 PQPYSGPILASTAPTLDGSYLSNPSNSNPAVMSL-----SSNFPSPPKPNN 319
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 376 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 477
S+STP PAS PP ++++K R+ +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.39
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +1
Query: 13 SSY*RQSLQLQAPNSSAPLKTASMKTTDNATSSSNVSMESPQ--PSSARTVLCSTLLSGR 186
SSY S+Q P SS PL+ S TT ++S++ + SPQ P + + ST S +
Sbjct: 2 SSYALPSMQ-PTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQ 60
Query: 187 XXXXXXXXXXXXXIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTA 330
N P P H+ AA S +P AT ST A
Sbjct: 61 HGQTRLPPINCLAEPFNR--PQPWHSNSAAPAS---SSPTSATLSTAA 103
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.39
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 3/165 (1%)
Frame = +1
Query: 40 LQAPNSSAPLKTASMKTTDNATSSSNVSMESPQP-SSARTVLCSTLLSGRXXXXXXXXXX 216
+ + +SS A T+ + SSS+V S P SS+ + L S+ LS
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
Query: 217 XXXIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVP 396
L+SS S T + ++ S+ + ++S T+ + TSTS+ +
Sbjct: 249 STSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308
Query: 397 ASGPIPPEDKDVTNNKKKQRTA--SSAPKSXWLMPKDRSSLTPSS 525
+S ++ ++ SS+P S SS +PSS
Sbjct: 309 SSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS-SSTISSSSSSPSS 352
Score = 27.1 bits (57), Expect = 2.1
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSSNVSMES--PQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 225
+SS+P T+S ++ +++SSS S S SS+ + STL S
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS-------- 330
Query: 226 IGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASG 405
+SSP S + + ++ S P + +T+S++ + TS+ST +S
Sbjct: 331 -SFSSSPTSSSSTISSSSSS-PSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSS 388
Query: 406 PIP-PEDKDVTNNKKKQRTASSAPKS 480
P ++ +SS+ KS
Sbjct: 389 SSSRPASSSSHSSSLSSHKSSSSSKS 414
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.52
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 4/159 (2%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSS--SNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 225
++S+P T S+ + ++TSS S+ S SP S+ ST+LS
Sbjct: 583 STSSPSST-SLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSS 641
Query: 226 I--GLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPA 399
I G +S S +P + + + +SST +S+S+P+P+
Sbjct: 642 IISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS 701
Query: 400 SGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLT 516
S + +N + +A S +P +S T
Sbjct: 702 SSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSST 740
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 31 SLQLQAPNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLS 180
SL L A +SS+ + T+ +T SSSN + S SSA ++ ST +S
Sbjct: 720 SLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSA--IVSSTTVS 767
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 31 SLQLQAPNSSAPLKTASMKTTDNATSS---SNVSMESPQPS-SARTVLCSTLLSG 183
SL + + ++S+ +AS + + +SS S+ + SP PS S+ + S+++SG
Sbjct: 591 SLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG 645
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 0.91
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Frame = +1
Query: 241 SPPSPTHNVPAAMDSLPIPT--PLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIP 414
+PP+P +P A+ ++P+P+ P A ++ S+ VP+ P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 415 PEDKDV-------TNNKKKQRTASSAPKSXWLMPKDRSSLTPSS 525
P+ +N R++ AP+ P+ +++ P++
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQEPVQKPQAINNIAPAT 1580
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 0.91
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Frame = +1
Query: 121 SMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIGLNSSPP-SPTHNVPAAMDSLPIP 297
+ME PQ + V ST S R N++ P T P S P P
Sbjct: 834 NMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTP 893
Query: 298 TPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKD 429
+ T A + STP P P+PP +D
Sbjct: 894 FEIANKQQATEPISAPF------ATETISTPAPVKPPVPPSRRD 931
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 273 GGDIVSWAWGAGVQSY 226
G I+SW+WG G +S+
Sbjct: 140 GSSILSWSWGLGFESF 155
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.1
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +1
Query: 31 SLQLQAPNSSAPLKTASMKTTD-NATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXX 207
S L + NS++ +S T N+T+S++VS +P +++ + S++ S
Sbjct: 372 STPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS----TPLSS 427
Query: 208 XXXXXXIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTS 384
+S+P S ++ A S TPL + +STTA + T+TS
Sbjct: 428 ANSTTATSASSTPLSSVNSTTATSAS---STPLSSVNSTTATSASSTPLTSVNSTTATS 483
Score = 26.6 bits (56), Expect = 2.8
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +1
Query: 55 SSAPLKTASMKTT--DNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXI 228
+SA ++S+ +T N+ +SS+++ S +++ T S++ S
Sbjct: 204 TSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTA 263
Query: 229 GLNSSPPSPT--HNVPAAM-DSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTS 384
++S S + +N + + S P TPL + +STTA + T+TS
Sbjct: 264 ATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTS 318
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.1
Identities = 29/140 (20%), Positives = 56/140 (40%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIG 231
+SS+P +++ TT ++SSS+ S S SS+ + S+ S
Sbjct: 140 SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSS---SSSSSSSSSSSSSSSSSSSSSS 196
Query: 232 LNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 411
+SS S + +VP + + ++SS+++ S+ST +
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVT 256
Query: 412 PPEDKDVTNNKKKQRTASSA 471
P T+++ TA+ A
Sbjct: 257 PSSSSSSTSSEVPSSTAALA 276
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 13 SSY*RQSLQLQAPNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVL 162
SS S + +SS P+ +++ + +++SSS+ S S +PSS+ + +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFI 241
Score = 25.8 bits (54), Expect = 4.8
Identities = 24/119 (20%), Positives = 52/119 (43%)
Frame = +1
Query: 46 APNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 225
+P+SS+ ++S ++ +++SSS+ S S SS+ + S+ S
Sbjct: 154 SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSS 213
Query: 226 IGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPAS 402
+S S + + ++ S P + T+ +++ + +STS+ VP+S
Sbjct: 214 TS-SSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSS 271
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 46 APNSSAPLKTASMKTTDNATSSSNVSMESPQPSSA 150
+P+SS+ T S ++ +++SSS+ S S SS+
Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 418 EDKDVTNNKKKQRTASSAPKS---XWLMPKDRSSLTPSSPHPNDCQR 549
+DKD+ N + S+PKS + +D +++ HP D QR
Sbjct: 78 DDKDINNPPSMPSSVCSSPKSPHRHYESDEDIENISLPESHPEDIQR 124
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 63 PAKDGQYEDDRQCDKFFECVDGVATTKLCPDGLVFDPTIRK 185
P Y DD ++ E V G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 491 INQXLFGALEAVLCFFLLFVTSLSSG 414
I LE +LCFFL++ T+ S G
Sbjct: 47 IRDSFLSQLENILCFFLVYRTTYSFG 72
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 297 DPSVCNIFYNCIEGEATEVKC 359
+P CN+ Y CIE + C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/91 (24%), Positives = 34/91 (37%)
Frame = +1
Query: 253 PTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKDV 432
PT N P+A S +PT +S T + ST+T A +
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQSADYVVAEHFAPQ 188
Query: 433 TNNKKKQRTASSAPKSXWLMPKDRSSLTPSS 525
N+++ ++P S P S+ PSS
Sbjct: 189 RNDEQ----LGNSPASITSKPATTSAAQPSS 215
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 494 GINQXLFGALEAVLCFFLLFVTSLSSGGIGPDAG 393
GI +GA +L F F S+ G PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 178 IVGSNTRPSGQSLVVATPSTHSKNLSHCLSSSYWPSLAGHLNWALAIA 35
I+ + PS S +V + L C + + ++ GH NW +A
Sbjct: 137 IISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVA 184
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 373 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLTPSSP 528
TSTSTP A+ P P V +KK SS + ++ PS+P
Sbjct: 77 TSTSTPKSAASPAPNPPASVP--EKKVEAPSSTVAESTSTTQTVAAAAPSNP 126
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 376 STSTPVPAS-GPIPPEDKDVTNNKKKQRTASSAPKS 480
S+STP +S PPED D K+ R A++ K+
Sbjct: 1414 SSSTPKASSTNAEPPEDSDSPIRKRPTRRAAATVKT 1449
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSS--NVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 225
++S P A +T + + SS NV+ P ++++ + +S
Sbjct: 465 SASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVGPVRISSNRRSRKFSSSSRVS 524
Query: 226 IG--LNSSPPSPTHNVPAAMDSLPIPTP 303
+ L SPPSP+ + +A S TP
Sbjct: 525 VSNLLAGSPPSPSSSTKSASSSYSTTTP 552
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/77 (27%), Positives = 28/77 (36%)
Frame = +1
Query: 244 PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPED 423
PPSP P + PIP+ L + A + S P+P P PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAA---PVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Query: 424 KDVTNNKKKQRTASSAP 474
+ N R +S AP
Sbjct: 208 QAPVAN-TSSRPSSFAP 223
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 494 PRTDRRSPQVPPTPTTANVFYVCPERGLAPGPXXA 598
P+ D SP + P T+N+ E L+P P A
Sbjct: 297 PQVDSYSPSINSVPYTSNIVENPSEDNLSPLPPPA 331
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 388 PVPASGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSL-TPSSPHPND 540
P PASGP E+++ T+ K QR + +S L P+D SSP +D
Sbjct: 328 PPPASGPYSQEEEE-TSLFKSQRKEENEEESKEL-PEDSDIYGKDSSPSSDD 377
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 94 DNATSSSNVSMESPQPSSARTV 159
D SSSNVS++S QP S V
Sbjct: 76 DAVASSSNVSLQSQQPLSKPVV 97
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 52 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSART 156
+SS+ ++S ++ +++SSS+ S S PSS+++
Sbjct: 183 SSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKS 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.123 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,207
Number of Sequences: 5004
Number of extensions: 57259
Number of successful extensions: 222
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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