Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2226
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.69
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 28 0.91
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.1
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.4
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 25 6.4
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.4
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 6.4
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 8.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 8.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.5
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.69
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Frame = +1
Query: 82 ICIETACPGVRAPIAPNSSHIPKS*SVRRRAVMDPVTSPATIPHT----GPSPAARGP-T 246
+C T CP +AP ++ P S S + ++V VT + HT P+ A P T
Sbjct: 218 LCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT 277
Query: 247 SRRANPETARIRSL*AHRAVQLRIGIKCGSWRVAEPSNNTRLLWPQPLQRSNSME*TVQR 426
P +A + A A Q+ + +R P R WP P ++ + V
Sbjct: 278 QPTFQPPSANVYQP-ASNANQVITPVSISDYR--PPKKRKRAAWP-PYKKVD----RVNV 329
Query: 427 PVVMDLAT*MDP 462
PVV D T DP
Sbjct: 330 PVVHD-TTAFDP 340
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 437 WIWPHKWI-LFDXSVALPAVQXPGPR 511
WIW W+ FD ++ LPA + G R
Sbjct: 602 WIWSANWVSFFDLNLQLPAPRAAGKR 627
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 35 KYSCHFQTLNILQGQRYASKQPVRVSARRSLPTPATFPRAEVSDAGL*WIRSRHRQLFL 211
+YS F++L L ++Y + + ++SL + A PR SDA RSR +LFL
Sbjct: 55 RYS-DFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLELFL 112
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 333 PAFYSDSQLDSPMRSKAPNPGRLWVCS 253
P SD ++ P RS+ P+P R + CS
Sbjct: 10 PLLISDPSVNKPFRSRTPSPEREY-CS 35
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 259 NPETARIRSL*AHRAVQLRIGIKCGSWRVAEPSNNTRLLW 378
N I S AV+ + + CG+W V +P N ++ +
Sbjct: 406 NESIPEIESKIHAEAVEEGVNLACGNWFVVDPRVNDKIFF 445
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 177 DGSGHVTGNYSSHRSLSGCPRANKPKSKPRDGQDSEP 287
+G+G GNYSSH S ++ K R S P
Sbjct: 175 NGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNP 211
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 82 ICIETACPGVRAPIAPNSSHIPKS*SVRRRAVMDPVTSPATIPHTGPSPAARGPTSRRAN 261
+ ++ A +RAP +SS + R P T+ A T P P A TS ++
Sbjct: 125 LVLKVAPSKIRAPAGNHSS------TTANRTTSTPTTTTARTTRTTPRPTATTNTSNQST 178
Query: 262 PETAR 276
+ R
Sbjct: 179 SNSTR 183
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 121 IAPNSSHIPKS*SVRRRAVMDPVTSPATIPHTG 219
+ P S+HI S + DP T+P+ I + G
Sbjct: 146 LCPKSNHIRMSTLISFTCNRDPYTAPSVITYVG 178
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 214 TGPSPAARGPTSRRAN 261
T PSP A GP+ R AN
Sbjct: 240 TSPSPLANGPSFRSAN 255
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 172 AVMDPVTSPATIPHTGPSPAARGP 243
AV+ P +PA IP P+P GP
Sbjct: 738 AVIVPTPAPAPIPVPPPAPIMGGP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,154
Number of Sequences: 5004
Number of extensions: 55529
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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