Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2226
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 33 0.13
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 33 0.13
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 33 0.13
02_05_1270 + 35360375-35360494,35361361-35361519,35361611-353617... 33 0.17
06_03_1310 + 29238644-29240260 32 0.31
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 32 0.40
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 32 0.40
02_04_0441 + 22960933-22961559 31 0.93
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 30 1.2
03_02_0510 - 9009980-9011392 30 1.2
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 30 1.6
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 29 2.2
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 3.8
02_04_0401 + 22614761-22614915,22615160-22615261,22616024-22616171 29 3.8
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 28 5.0
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 28 5.0
02_04_0396 - 22591963-22592150,22592571-22592649 25 5.7
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 26 5.7
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 28 6.6
08_01_0565 + 5026308-5026730 28 6.6
08_02_1411 + 26880766-26880911,26881000-26881097,26881207-268812... 27 8.7
05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703 27 8.7
03_04_0206 - 18493178-18495310 27 8.7
03_01_0031 + 292335-292844 27 8.7
01_07_0105 - 41104655-41104851,41105818-41107150 27 8.7
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 36 NIRVTFKRSTFYKDKDMHRNSLSGCPRADRSQLQPHSQELKCPTPGCDGSGHVTGN 203
N+ + FK + F +K++ L GC D + +P ++ C T C G G V +
Sbjct: 206 NLVLNFKEAVFGVEKEIEITRLEGCNTCDGTGAKPGTKPTTCKT--CGGQGQVVSS 259
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 36 NIRVTFKRSTFYKDKDMHRNSLSGCPRADRSQLQPHSQELKCPTPGCDGSGHVTGN 203
N+ + FK + F +K++ L GC D + +P ++ C T C G G V +
Sbjct: 206 NLVLNFKEAVFGVEKEIEITRLEGCNTCDGTGAKPGTKPTTCKT--CGGQGQVVSS 259
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 36 NIRVTFKRSTFYKDKDMHRNSLSGCPRADRSQLQPHSQELKCPTPGCDGSGHVTGN 203
N+ + FK + F +K++ L GC D + +P ++ C T C G G V +
Sbjct: 206 NLVLNFKEAVFGVEKEIEITRLEGCNTCDGTGAKPGTKPTTCKT--CGGQGQVVSS 259
>02_05_1270 +
35360375-35360494,35361361-35361519,35361611-35361722,
35362306-35362422,35362570-35362721,35362804-35362986,
35363627-35363661,35363809-35363965,35364052-35364105,
35364196-35364288,35364373-35364515,35364753-35364823,
35365234-35365317,35365408-35365532,35366918-35366938
Length = 541
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 597 LKXGFWKXSXVYIIPGTXGFFVGXGRKXWRGPGXWTAGRATDXSKRIHL 451
L G + + +YI+P T G F+ GRK WT G+ +H+
Sbjct: 476 LMDGHGQPALLYIVPFTLGTFIALGRKRGELRNLWTRGQPERVCTHMHM 524
>06_03_1310 + 29238644-29240260
Length = 538
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 94 TACPGVRAPIAPNSSHIPKS*SVRRRAVMDPVTSPATIPHTGPSPAARGPTSRRANP 264
T PG R P+AP+ S +P RR P S T H P P + + + P
Sbjct: 369 TRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMP 425
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 234 PRANKPKSKPRD-GQDSEPLSASGCPIANR 320
PRA +PK +P D G+D +P + C + NR
Sbjct: 418 PRATRPKKQPEDGGKDEKPSAGVDCELYNR 447
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 172 AVMDPVTSPATIPHTGPSPAARGPTSRRANPETARIRS 285
A +DPV + ++GP + R PT RA+P+ +R S
Sbjct: 511 ANVDPVRPSGLVGYSGPLVSKRAPTPARASPKASRTAS 548
>02_04_0441 + 22960933-22961559
Length = 208
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 112 RAPIA-PNSSHIPKS*SVRRRAVMDPVTSPATIPHTGPSPAARGPTSRRANPETARIRSL 288
RAP+A P ++ P + + P+T P+T+ TG + +R RR E R
Sbjct: 33 RAPVATPPAARAPPVGAPPLHSWRHPITLPSTLSGTGANTVSRAEKPRRPAVEELPRRRG 92
Query: 289 *AHRAVQLRIGI 324
HRA Q R G+
Sbjct: 93 DEHRAEQ-RAGL 103
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 181 DPVTS--PATIPHTGPSPAARGPTSRRANPETARIRSL*AHRAVQLRIGIKCGSWRVAEP 354
DP T PA H GP PA R P S A P TA + RAV L I K S +++P
Sbjct: 38 DPATEAPPAPKQHRGPRPAPRNPGS--AKPLTAGVPGGRTRRAV-LGIIRKVRSLELSDP 94
>03_02_0510 - 9009980-9011392
Length = 470
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 211 HTGPSPAARGPTSRRANPETAR--IRSL*AHRAVQLRIGIKCGSWRVA 348
H+GP PA GP+++R PE IR L + R R+ ++ W VA
Sbjct: 178 HSGPIPAQPGPSAKRQVPEPGEKLIRELNSQRQKVRRL-MESSLWSVA 224
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 234 GSRRGTGVRNSCR*RDRIHHSPASDTSALGNV 139
G + TGVR SCR ++R HHS S + GN+
Sbjct: 582 GEKGQTGVRMSCRVKNRTHHS-GSLVTPEGNI 612
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 90 RNSLSGCPRADRSQLQP-HSQELKCPTPGCDGSGHVTGNYSSHRSLS 227
R+ LS +A R+ ++ E+ C CDG + N S H+ S
Sbjct: 312 RHELSNSDQAARAMTDADYNDEIACHVDDCDGDARLDQNSSDHKKFS 358
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 46 SLSNAQHFTRTKICIETACPGVRAPIAPNSSHIPKS*SVRRRAVMDPVTSPATIP 210
SL +H T TK+ + CP V AP+A +PKS S + MD + + P
Sbjct: 92 SLPQNKH-TETKL--QAPCPVVTAPLANGLQWVPKSRSSGSESNMDDAPTSGSDP 143
>02_04_0401 + 22614761-22614915,22615160-22615261,22616024-22616171
Length = 134
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 152 AEVSDAGL*WIRSRHRQLFLTPVPLRLPEG 241
A +S L W RSR RQ+ + P PL + G
Sbjct: 3 AHLSSTSLRWQRSRLRQVLVLPPPLAMASG 32
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 396 IKFDGVNCPTPGCDGSGHINGS 461
I DG NC T GC G G I+GS
Sbjct: 389 ISTDGANCGTKGC-GVGEIHGS 409
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 354 RFRHSPRPAFYSDSQLDSPMRSKAPNPGRLW-VCSSACWPSGS 229
R R SPRP Y+D R + P P R W V SSA GS
Sbjct: 19 RLRPSPRPGAYAD-------RLRPPLPARRWRVASSAAASGGS 54
>02_04_0396 - 22591963-22592150,22592571-22592649
Length = 88
Score = 25.4 bits (53), Expect(2) = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -3
Query: 160 HFSSWECGWSWERSARGHPDRLFRC 86
H W G W RGH FRC
Sbjct: 63 HDDPWRHGCRWGCCHRGHHGECFRC 87
Score = 21.4 bits (43), Expect(2) = 5.7
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -3
Query: 172 PGVGHFSSWECGW 134
PG GH+ W G+
Sbjct: 43 PGYGHYPPWNGGY 55
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 25.8 bits (54), Expect(2) = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 208 PHTGPSPAARGPTSRRANPE 267
P + P+P RG SRR PE
Sbjct: 93 PASSPAPRGRGRKSRRGRPE 112
Score = 20.6 bits (41), Expect(2) = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 115 APIAPNSSHIPKS*SVRRR 171
AP A N +H P S R+R
Sbjct: 37 APAAENGTHDPASGQKRKR 55
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 69 YKDKDMHRNSLSGCPRADRSQLQP 140
Y D+ + + L GC R D S LQP
Sbjct: 334 YDDEGLQASELIGCARVDLSDLQP 357
>08_01_0565 + 5026308-5026730
Length = 140
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 233 AAGEGPV*GI-VAGDVTGSITARRRTLQLLGMWLELGAIGARTPG 102
AAG V + AG + S RRR L ++G+ A+ A PG
Sbjct: 60 AAGNPSVFSLPAAGAIASSYLRRRRDLSVVGLLTAASAVTAHVPG 104
>08_02_1411 +
26880766-26880911,26881000-26881097,26881207-26881274,
26881595-26881683,26881786-26882007,26883056-26883790,
26883880-26884078,26884319-26884404,26886175-26886536,
26887290-26887921
Length = 878
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 241 PTSRRANPETARIRSL*AHRAV-QLRIGIKCGSWRVAEPSNNTR 369
PTSR +P + R + A R V + R CG WR A P+ + R
Sbjct: 46 PTSREESPSASGSRVIWAQRRVAEWR---SCGWWRAAMPAPSRR 86
>05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 272 AVSGFALRLVGPRAAGEGPV*GIVAGDVTGSITARRRTLQLLGMW 138
A G A R V AAG G G D G + R+ +++G W
Sbjct: 42 ASGGLAFRFVAAAAAGGGGGGGRALLDAAGGVLVTVRSGEVMGEW 86
>03_04_0206 - 18493178-18495310
Length = 710
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 263 GFALRLVGPRAAGEGPV*GIVAGDVTGSITARRRTLQL 150
G + +VGP AG+ + ++AGD+T + RR+ +L
Sbjct: 510 GTRVAIVGPNGAGKSTLLNLLAGDLTPTKGEVRRSQKL 547
>03_01_0031 + 292335-292844
Length = 169
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 374 CGRSRFSDQIRWSELSNARL*WIWPHKWI 460
CGR R+S+ RW R W W +WI
Sbjct: 32 CGR-RWSEWRRWRRRRGWRRRWGWQRRWI 59
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 103 PGVRA-PIAPNSSHIPKS*SVRRRAVMDPVTSPATIPH-TGPSPAARGPTS 249
PG RA P+ N+ + + V +V P T+PAT+ + T S AA P +
Sbjct: 275 PGARARPVVANADEVHQEDDVT--SVTSPTTAPATLENDTSSSAAAAFPAA 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,070
Number of Sequences: 37544
Number of extensions: 482238
Number of successful extensions: 1786
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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