Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2223
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   0.69 
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   8.4  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +3

Query: 33  VCLALKAKNINFTNARNLANGIQIKVQ--TPDDHRALSSYLRKERISFHTY--TLQEERE 200
           +CL  +  ++N T +RN+   +Q+ +     +   A  + + KE  +F +    + +  E
Sbjct: 492 ICLMAELDHLNETKSRNVPATVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLE 551

Query: 201 LRVVIRGIPKELDVELVK 254
           LR  +R +  E DVE+ K
Sbjct: 552 LREKVRAL--ECDVEIQK 567


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 24  WDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERI--SFHTYTLQEE 194
           W R+ L  + + I+     NLA G+    +  D    ++  LR  ++  S+    +QE+
Sbjct: 328 WARITLIFEGEKISEDQRSNLAKGVVDWRKNSDQLEVITDVLRDHQVGLSYVVKLMQED 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,535
Number of Sequences: 5004
Number of extensions: 31590
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)