Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2223
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           29   2.1  
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968     29   2.1  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    28   3.7  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   4.8  
08_02_1422 - 26971803-26971900,26974083-26975061                       27   6.4  

>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 15  KAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFH 173
           K +W ++   LK    +  N RNL   +Q ++Q P+ +R +S+ +   R+  H
Sbjct: 116 KTSWHKIARELKDSQCHLQNLRNL--WVQYEIQLPNGNR-VSTDVEDHRLPHH 165


>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
          Length = 800

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 140 REGPMVVGCLNLNLNAVREVTGIREIYIFGLKGQANSI 27
           REG   VG LN+N NA  E+   RE+ I G  G   S+
Sbjct: 393 REG---VGYLNMNFNATIEIVTSREVKICGALGPCISL 427


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 78  RNLANGIQIKVQTPDDHRALSSYLR 152
           +NLAN +Q ++Q PDD+     YLR
Sbjct: 637 QNLANELQSQIQPPDDNIMSIDYLR 661


>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 400 LQTVCVLKIFLPSGVGWRATRTILYGSLPR--PVCIRCTEFTGRP 272
           ++T+C+L   LPSG+    TR   + +  R   +C+ C +F+G P
Sbjct: 782 IRTLCILGSALPSGI----TREACFVTPQRLGQLCLECFKFSGLP 822


>08_02_1422 - 26971803-26971900,26974083-26975061
          Length = 358

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = +3

Query: 120 DDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVHR 299
           D+  + SS L +  +  H Y L    E  +V  G  K  D+  +  D      P+   + 
Sbjct: 117 DNGESWSSSLEQVPLP-HVYPLPVIEEFGIVPNG-GKHFDLAALVVDYRS---PMKCSYS 171

Query: 300 MHTGRGREPYNMVLVALXPTPEGKKIFNTQTVCRLSGI 413
           MH    ++    V+  + P PE +K+  T+ +    G+
Sbjct: 172 MHIYSSKDTNWRVIPMVDPYPEVRKVIATKVITIAEGV 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,841
Number of Sequences: 37544
Number of extensions: 228314
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)