Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2223
(500 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 49 3e-06
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 47 2e-05
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 46 2e-05
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 46 2e-05
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 41 8e-04
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 40 0.002
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 40 0.002
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 31 0.88
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 31 0.88
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 30 2.0
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 30 2.0
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 30 2.0
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 30 2.0
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 29 2.7
AE014298-825|AAF46105.1| 362|Drosophila melanogaster CG6048-PA ... 29 2.7
U11691-1|AAA19905.1| 796|Drosophila melanogaster E239.9-1 protein. 28 8.2
AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein. 28 8.2
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 28 8.2
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/113 (23%), Positives = 53/113 (46%)
Frame = +3
Query: 39 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 218
L KA +FT L N I+I+ +T D H A+ + L + I H++ + + ++VIR
Sbjct: 656 LNYKAGVNSFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIR 715
Query: 219 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEGKKI 377
+ + + +++ L + G+ + M R P + V + P +G +
Sbjct: 716 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 768
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/113 (23%), Positives = 53/113 (46%)
Frame = +3
Query: 39 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 218
L KA +FT L N I+I+ +T D + A+ + L + I H++ + + ++VIR
Sbjct: 656 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYNAIQNVLLEANIPLHSHQPKSAKGFQIVIR 715
Query: 219 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEGKKI 377
+ + + +++ L + G+ + M R P + V + P +G +
Sbjct: 716 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 768
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/113 (23%), Positives = 53/113 (46%)
Frame = +3
Query: 39 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 218
L KA +FT L N I+I+ +T D ++A+ + L I H++ + + ++VIR
Sbjct: 579 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIR 638
Query: 219 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEGKKI 377
+ + + +++ L + G+ + M R P + V + P +G +
Sbjct: 639 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 691
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/113 (23%), Positives = 53/113 (46%)
Frame = +3
Query: 39 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 218
L KA +FT L N I+I+ +T D ++A+ + L I H++ + + ++VIR
Sbjct: 579 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIR 638
Query: 219 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEGKKI 377
+ + + +++ L + G+ + M R P + V + P +G +
Sbjct: 639 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 691
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +3
Query: 129 RALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVH---- 296
R + ++L E FH Y L+E+R RV ++G+ +K +L + G V +H
Sbjct: 175 RTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLR 234
Query: 297 RMHTGRGR-EPYNMVLVALXPTPEGKKIFNTQTVCRL 404
R G + P NM + + K+I + +C +
Sbjct: 235 RNEPGTSKASPVNMFFLNIAAAANNKEILAVKALCHM 271
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +3
Query: 96 IQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGI-----PKELDVELVKAD 260
I++++QT DHR ++ YL +++TY L+ + L+VV++GI P E+ +E +KA
Sbjct: 261 IKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEI-IEALKAK 319
Query: 261 LLEQGLPVNSVHR 299
+N +++
Sbjct: 320 NFSAKTAINILNK 332
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 427 PHKKGTPSQCHNCQLY 474
PHK+ P QC NCQ Y
Sbjct: 375 PHKRINPVQCTNCQEY 390
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +3
Query: 96 IQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGI-----PKELDVELVKAD 260
I++++QT DHR ++ YL +++TY L+ + L+VV++GI P E+ +E +KA
Sbjct: 105 IKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEI-IEALKAK 163
Query: 261 LLEQGLPVNSVHR 299
+N +++
Sbjct: 164 NFSAKTAINILNK 176
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 427 PHKKGTPSQCHNCQLY 474
PHK+ P QC NCQ Y
Sbjct: 219 PHKRINPVQCTNCQEY 234
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 99 QIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGL 278
+I PD R L K F + L+EE+ RVV++GI + ++ + G
Sbjct: 238 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 297
Query: 279 PVNSVH 296
V +++
Sbjct: 298 EVLNIY 303
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 99 QIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGL 278
+I PD R L K F + L+EE+ RVV++GI + ++ + G
Sbjct: 272 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 331
Query: 279 PVNSVH 296
V +++
Sbjct: 332 EVLNIY 337
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/102 (20%), Positives = 38/102 (37%)
Frame = +3
Query: 63 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 242
++T NG++I+ + + + L + T + ER RV+IR +
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169
Query: 243 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEG 368
+ +LL+ G V M P M V + +G
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 211
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/102 (20%), Positives = 38/102 (37%)
Frame = +3
Query: 63 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 242
++T NG++I+ + + + L + T + ER RV+IR +
Sbjct: 517 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 576
Query: 243 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEG 368
+ +LL+ G V M P M V + +G
Sbjct: 577 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 618
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/102 (20%), Positives = 38/102 (37%)
Frame = +3
Query: 63 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 242
++T NG++I+ + + + L + T + ER RV+IR +
Sbjct: 495 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 554
Query: 243 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEG 368
+ +LL+ G V M P M V + +G
Sbjct: 555 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 596
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/102 (20%), Positives = 38/102 (37%)
Frame = +3
Query: 63 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 242
++T NG++I+ + + + L + T + ER RV+IR +
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169
Query: 243 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALXPTPEG 368
+ +LL+ G V M P M V + +G
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 211
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 427 PHKKGTPSQCHNCQLY 474
PHK+ P QC NCQ Y
Sbjct: 31 PHKRNAPVQCTNCQEY 46
>AE014298-825|AAF46105.1| 362|Drosophila melanogaster CG6048-PA
protein.
Length = 362
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = -2
Query: 400 LQTVCVLKIFLPSGVGWRATRTILYGSLPRPVCIRCTEFTGRPCSNRSAFTSSTSNSLGI 221
L V +L IFLPSG+ TRT L RP R GR + A +T + +GI
Sbjct: 7 LLAVALLLIFLPSGLRGATTRTHLDTKAIRP---RFNADPGRIINGTEASLGATRHQVGI 63
>U11691-1|AAA19905.1| 796|Drosophila melanogaster E239.9-1 protein.
Length = 796
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 174 TYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVH 296
T T + + + IR PK L++E + L + LPVN+++
Sbjct: 491 TGTCISKHKAVISIRNSPKNLEIEAIILPKLMKALPVNTIN 531
>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
Length = 2360
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 174 TYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVH 296
T T + + + IR PK L++E + L + LPVN+++
Sbjct: 570 TGTCISKHKAVISIRNSPKNLEIEAIILPKLMKALPVNTIN 610
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/93 (22%), Positives = 33/93 (35%)
Frame = +3
Query: 90 NGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLE 269
NG++I+ + + L T + ER RVVIR + + +LL+
Sbjct: 534 NGVRIQAKDMTAFNKIKEVLVANGFPLFTNQPKSERGFRVVIRHLHHSTPCSWIVEELLK 593
Query: 270 QGLPVNSVHRMHTGRGREPYNMVLVALXPTPEG 368
G V M P M V + +G
Sbjct: 594 LGFQARFVRNMTNPATGGPMRMFEVEIAMAKDG 626
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,087
Number of Sequences: 53049
Number of extensions: 375150
Number of successful extensions: 1061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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