Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2217
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   2.9  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   5.0  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    26   5.0  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 349 HRRRDLGCTQPHAVATLSHSIRGGSQLFAEL 441
           HR   +GCTQP  VA +S + R   ++   L
Sbjct: 535 HRNGMIGCTQPRRVAAMSVAKRVSEEMGVRL 565


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 125 GLAARQEKRMPPGAAIPALNSISSL 51
           G   + EKR+P G  + AL +ISS+
Sbjct: 158 GFVVKHEKRLPDGPRVLALRAISSV 182


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 421 SQLFAELKFLESIKFFRIQPVELRRV 498
           +QLFA++K LE  K  R+ P + RRV
Sbjct: 10  NQLFADVKDLERKKKRRVPPEQRRRV 35


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 485 STGCILKNLMLSRNLSSANSWLPPLIE*DKV 393
           STGC++  LML   L    S +  L+E  K+
Sbjct: 218 STGCVMAELMLGHPLFPGESGIDQLVEIIKI 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,142
Number of Sequences: 5004
Number of extensions: 51681
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)