Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2217
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    30   1.7  
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    30   2.3  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    29   3.9  
06_01_0602 - 4342333-4342790,4342899-4345623                           29   3.9  
03_05_0356 - 23421394-23421870                                         29   5.2  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   9.1  
02_01_0429 - 3132848-3135043                                           28   9.1  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    28   9.1  

>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 135 STSGSCSTAGKANASGSCNSGLELNKFIISLPG--EASIKFNLSSGS 1
           ST+GSC+T G+ N+ G C      + + + L    E + +FN +S S
Sbjct: 182 STNGSCTTNGRVNSDGLCPGTACCDAYGMPLDDAQEVTFEFNKTSAS 228


>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 28  TCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 135
           +C + + NN L++F AG++  GG+  S R     C+
Sbjct: 19  SCCTERENNCLLQFLAGLSQDGGLAASWRLGTDCCS 54


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 431 NSWLPPLIE*DKVATACG*VQPRSRRRCPQLRH 333
           N+  PP+ +     T C   +PR   RCP  RH
Sbjct: 450 NAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRH 482


>06_01_0602 - 4342333-4342790,4342899-4345623
          Length = 1060

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 180 F*FSKIVSNCDNDMTSTSGSCSTAGKANASGSCNS 76
           F  +K+V N D D+T+ SGS + A    +S  CNS
Sbjct: 864 FGIAKLVKNADGDVTTNSGSIAAA----SSDPCNS 894


>03_05_0356 - 23421394-23421870
          Length = 158

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 122 LAARQEKRMPPGAAIPALNSISS 54
           +A ++ K+MPP AA PAL  I+S
Sbjct: 103 VARKETKKMPPAAASPALADIAS 125


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 298 ADESPKADTVDGCLSWGHRRRDLGCTQPHAVATLS 402
           ADE+P A   D CL       D+G T   A A+LS
Sbjct: 144 ADETPDAVPHDMCLVLSQATNDVGRTSHRAAASLS 178


>02_01_0429 - 3132848-3135043
          Length = 731

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 25  DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 135
           D+C+ ++++  L++F AG++  GG+  S R     CT
Sbjct: 35  DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 70


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 25  DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 135
           D+C+ ++++  L++F AG++  GG+  S R     CT
Sbjct: 458 DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,806,677
Number of Sequences: 37544
Number of extensions: 393518
Number of successful extensions: 1176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)