Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2217
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF022979-3|AAB69902.2|  198|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical
           protein Y17G7B.4 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 256 NAMHRTVYHSST*PADESPKADTVDGCLSWGHRRRDLGCTQPHAVATL 399
           N    TVY ++    D S      D  +SWG  +   G  + HA ATL
Sbjct: 306 NGADHTVYINTGQEFDGSDSGAQPDEAVSWGKVKPSAGAVKVHAEATL 353


>AF022979-3|AAB69902.2|  198|Caenorhabditis elegans Hypothetical
           protein T02B11.4 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 305 SHPKPIPSMDALAGDIDAATSAALNHMLWLPYLTQLEAVAN-CSQSLNFLKALN 463
           S  K IP+M+  +G        AL   L  P++ Q + V N C + LN  KA N
Sbjct: 78  SMSKAIPAMNLYSGFNSCTDLMALIDKLMKPFMNQCKQVINKCLKVLNNCKANN 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,172
Number of Sequences: 27780
Number of extensions: 301463
Number of successful extensions: 775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)