Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2216
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   146   3e-36
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   2.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   6.1  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  146 bits (354), Expect = 3e-36
 Identities = 82/203 (40%), Positives = 105/203 (51%), Gaps = 2/203 (0%)
 Frame = +3

Query: 3   FICIYLHIGRGIYYESFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVITN 176
           FI +YLHIGRG+YY S+                         Y LP  Q+SFWGATVITN
Sbjct: 90  FIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITN 149

Query: 177 LLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXXQTGSNNP 356
           LLSA+P++G  LV+ + GGF+V N TL RF++                       GS+NP
Sbjct: 150 LLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNP 209

Query: 357 LGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXXNPYLLGDPDNFTPANPLVTPVHI 536
           LG+  N+D+IP +P++  KD                 NPY   +PD   PA+PL TP+ I
Sbjct: 210 LGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSI 269

Query: 537 QPE*YFLFAYAILRSIPNKLGGV 605
            PE Y L  YAILR+IPN   GV
Sbjct: 270 VPEWYLLPFYAILRAIPNFQLGV 292


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 74  NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 163
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 74  NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 229
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 101 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 202
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,146
Number of Sequences: 5004
Number of extensions: 30019
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)