Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2214
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.18 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    29   0.54 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    27   3.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   6.6  

>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 437 NGNSISQFSREFYLILDTIKHSKYYTTNPEEACLLVPSIDTLNQASFSKSEVSQA 601
           NGN+ S   R+  + L   K  K    NP    L+   +D  + +   KSEV+ A
Sbjct: 203 NGNTSSNLKRKANVTLGDYKRLKVKNKNPSSQELITADVDKTSGSLSEKSEVNHA 257


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 455 QFSREFYLILDTIKHSKYYTTNPEEACLLVPSIDTLNQASFSKSEVSQALQSLSHWNNGE 634
           ++S +   + DT+     Y T P++  L  P  DT +  +++ S       S S  +   
Sbjct: 221 KYSHQQTNVFDTLNVIDSYPTAPDQVAL-PPFPDTNSTLTYTPSNSQSIYSSQSQPSPYS 279

Query: 635 NPLLFNMLPGSPP 673
            PLL ++ P  PP
Sbjct: 280 RPLLSSVHPNLPP 292


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 542 VPSIDTLNQASFSKSEVSQALQSLSHWNN 628
           +P+I  +N + F    ++ +LQ + HW N
Sbjct: 773 IPNIQNINMSIFEAFPIACSLQQIEHWVN 801


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 155 YHRFFVGLLLFIVISLVLTVVFNAFSGPL-PRTSV 256
           Y R+F+ +L+FIV +L+ +V+     G L  RT+V
Sbjct: 84  YRRYFIWILIFIV-ALICSVLIGVLGGVLGHRTAV 117


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 287 KVVLSRNAPFSQIRSANCTYWDCFDVYKCGRGGHDKITIYIYPLKDYQTEN 439
           K+V+SR      I  +     D F  Y  G  GH  I    +P+KDY  E+
Sbjct: 720 KLVISRIPNLKVILMSATVNSDTFKYY-FGNAGHLHIHGRTFPIKDYYIED 769


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 110 KASKHSKYLPYRNFLYHRFFVGLLLFIVISLVLTVVFNAFSGPL 241
           K  KH + LP  NF Y +F+    +    +L  T     F  P+
Sbjct: 114 KRRKHFRMLPQNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,131
Number of Sequences: 5004
Number of extensions: 56942
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)