Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2214
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0469 - 19424703-19424906,19425073-19425142,19425409-194263...    29   3.9  
08_02_1110 + 24371934-24374763,24375034-24375518                       29   3.9  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    29   5.2  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   9.1  
04_04_0249 - 23894369-23894406,23894584-23894648,23895285-238953...    28   9.1  

>12_02_0469 -
           19424703-19424906,19425073-19425142,19425409-19426302,
           19426975-19427124,19427382-19427572,19427713-19427835
          Length = 543

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 362 VYKCGRGGHDKI-----TIYIYPLKDYQTENGNSISQFSREFYL-ILDTIKH 499
           V KC  GG+DK+      +Y Y   + ++E+ NS      ++Y+ +LD ++H
Sbjct: 131 VMKCKYGGYDKVGFVKKDLYNYSSSNQRSESLNSCLHRHLDYYMSLLDLVEH 182


>08_02_1110 + 24371934-24374763,24375034-24375518
          Length = 1104

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 LVLTVVFNAFSGPLPRTSVYESIDLN 277
           + L + +NAFSG LP T+ ++ + +N
Sbjct: 657 VTLNISYNAFSGELPDTAFFQKLPIN 682


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 114 AFNSKSAAICDLKRYIDPGNSFAVPIIVNSL 22
           A N K + ICDL  +   GNS+ V II+  L
Sbjct: 227 AINVKVSDICDLNPHEALGNSYVVNIIIRDL 257


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 206 LTVVFNAFSGPLPRTSVYESIDL-NKRSKVVLSRNAPFSQIRSANCTYWD 352
           L + FN  SGP+P T ++ ++ +       +L    P+ Q  S  C+Y D
Sbjct: 600 LNLSFNKLSGPVPNTGIFRNVTIVLLLGNKMLCGGPPYMQFPS--CSYED 647


>04_04_0249 -
           23894369-23894406,23894584-23894648,23895285-23895372,
           23895458-23895562,23895763-23895882,23896016-23896214
          Length = 204

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 482 LDTIKHSKYYTTNPEEACLLVPSIDTLNQASFSKS 586
           LDTI+ + Y +   ++     P+ID L+ A+F K+
Sbjct: 110 LDTIEIAVYASVERDDLSCTCPTIDNLSDANFKKN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,828
Number of Sequences: 37544
Number of extensions: 322170
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)