Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2214
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 64 8e-11
U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 64 8e-11
AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 64 8e-11
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z92838-3|CAB07409.2| 440|Caenorhabditis elegans Hypothetical pr... 28 6.2
U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical pr... 28 8.1
U37548-5|ABM01869.1| 224|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical
protein F12F6.3 protein.
Length = 382
Score = 64.5 bits (150), Expect = 8e-11
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Frame = +2
Query: 323 IRSANCTYWDCFDVYKCGRGGHDKITIYIYPLKDYQTENGNSISQFSREFYLILDTIKHS 502
I CT +CFD KC +YI+P++ E+ S+ +S+ IL S
Sbjct: 25 IERKQCTMSNCFDFSKCSTSKK----VYIHPMEKRFEESPQSVI-YSK----ILKHFLES 75
Query: 503 KYYTTNPEEACLLVPSIDTLNQASFSKS---EVSQALQSL--SHWNNGENPLLFNMLPGS 667
+YT +P EAC+ + IDT ++ S++ V+ ++SL S WNNG N L+FN G+
Sbjct: 76 NHYTNDPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGT 135
Query: 668 PPNYN 682
P+Y+
Sbjct: 136 FPDYD 140
>U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses
homolog 1 protein.
Length = 378
Score = 64.5 bits (150), Expect = 8e-11
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Frame = +2
Query: 323 IRSANCTYWDCFDVYKCGRGGHDKITIYIYPLKDYQTENGNSISQFSREFYLILDTIKHS 502
I CT +CFD KC +YI+P++ E+ S+ +S+ IL S
Sbjct: 21 IERKQCTMSNCFDFSKCSTSKK----VYIHPMEKRFEESPQSVI-YSK----ILKHFLES 71
Query: 503 KYYTTNPEEACLLVPSIDTLNQASFSKS---EVSQALQSL--SHWNNGENPLLFNMLPGS 667
+YT +P EAC+ + IDT ++ S++ V+ ++SL S WNNG N L+FN G+
Sbjct: 72 NHYTNDPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGT 131
Query: 668 PPNYN 682
P+Y+
Sbjct: 132 FPDYD 136
>AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate
polymerase protein.
Length = 382
Score = 64.5 bits (150), Expect = 8e-11
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Frame = +2
Query: 323 IRSANCTYWDCFDVYKCGRGGHDKITIYIYPLKDYQTENGNSISQFSREFYLILDTIKHS 502
I CT +CFD KC +YI+P++ E+ S+ +S+ IL S
Sbjct: 25 IERKQCTMSNCFDFSKCSTSKK----VYIHPMEKRFEESPQSVI-YSK----ILKHFLES 75
Query: 503 KYYTTNPEEACLLVPSIDTLNQASFSKS---EVSQALQSL--SHWNNGENPLLFNMLPGS 667
+YT +P EAC+ + IDT ++ S++ V+ ++SL S WNNG N L+FN G+
Sbjct: 76 NHYTNDPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGT 135
Query: 668 PPNYN 682
P+Y+
Sbjct: 136 FPDYD 140
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 377 RGGHDKITIYIYPLKDYQTENGN----SISQFS-REFYLILDTIKH 499
RGG+DK+++++ PL DY + + I +F R+ Y + T H
Sbjct: 764 RGGYDKMSLHVTPLNDYDLLSWSFTDIDIKEFGRRQTYFVFMTYGH 809
>Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 404 YIYPLKDYQT-ENGNSISQFSREFYLILDTIKHSKYYTTNPEEACLLVPSIDTLNQASFS 580
Y+Y DY+ +N N I Q Y++ +HSK T N E+ D ++AS S
Sbjct: 595 YVYIHADYRPWDNNNDIQQIENN-YVVKTISRHSKRKTGNSEQL-----GSDNTSEASES 648
Query: 581 KSEV 592
EV
Sbjct: 649 DEEV 652
>Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 404 YIYPLKDYQT-ENGNSISQFSREFYLILDTIKHSKYYTTNPEEACLLVPSIDTLNQASFS 580
Y+Y DY+ +N N I Q Y++ +HSK T N E+ D ++AS S
Sbjct: 595 YVYIHADYRPWDNNNDIQQIENN-YVVKTISRHSKRKTGNSEQL-----GSDNTSEASES 648
Query: 581 KSEV 592
EV
Sbjct: 649 DEEV 652
>Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical
protein ZK1086.1b protein.
Length = 770
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 404 YIYPLKDYQT-ENGNSISQFSREFYLILDTIKHSKYYTTNPEEACLLVPSIDTLNQASFS 580
Y+Y DY+ +N N I Q Y++ +HSK T N E+ D ++AS S
Sbjct: 632 YVYIHADYRPWDNNNDIQQIENN-YVVKTISRHSKRKTGNSEQL-----GSDNTSEASES 685
Query: 581 KSEV 592
EV
Sbjct: 686 DEEV 689
>Z92838-3|CAB07409.2| 440|Caenorhabditis elegans Hypothetical
protein T03D8.4 protein.
Length = 440
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 506 YYTTNPEEACLLVPSIDTLNQASFSKSEVSQALQS-LSHWNNGENPLLFNMLPGSP 670
Y TTN + + VPS +NQ S + + V A+ S L N P+ ++LP P
Sbjct: 246 YRTTN-RQPVVYVPSASPVNQPSHASNTVPVAVASYLVTANPSSQPIQLHILPPIP 300
>U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical
protein C33G8.5 protein.
Length = 328
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 176 LLLFIVISLVLTVVFNAFSGPLPRTSVYESIDLNKRSKVVLSRNAPFSQIRSANC 340
L LF+ + + + F+A P+P ++Y L V + NAP + A C
Sbjct: 144 LQLFLAFAFLFKLYFDASFTPVPNVTLYYCQTLASGHGSVWTINAPLYAVMIAQC 198
>U37548-5|ABM01869.1| 224|Caenorhabditis elegans Hypothetical
protein C54D2.6 protein.
Length = 224
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 503 KYYTTNPEEACLLVPSIDTLNQASFSK 583
+ Y TN E +CLLVP I +NQ F +
Sbjct: 194 RVYPTN-EVSCLLVPIITEMNQVDFQE 219
>AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical
protein H24D24.1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 389 DKITIYIYPLKDYQTENG---NSISQFSREFYLILDTIKHSKYYTTN 520
D I I +YP+ DYQ I F F+LI+ T K + YT N
Sbjct: 16 DHIIILVYPVLDYQAHVKFVIAVIGVFVNIFHLIVLTRKSLRVYTIN 62
>AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical
protein C52E2.4 protein.
Length = 658
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 569 ASFSKSEVSQALQSLSHWNNGENPLLFNMLPGS 667
+ F +E + L SL+HW N E ++ LP S
Sbjct: 519 SGFILNEFMEQLASLAHWRNAEEFMINIFLPSS 551
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,431
Number of Sequences: 27780
Number of extensions: 316927
Number of successful extensions: 788
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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