Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2213
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    31   1.2  
06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749...    28   6.2  
07_03_0861 + 22072041-22072789,22074065-22074164                       28   8.2  

>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -1

Query: 340 CFGVYAAIWHISSISLRPVVSMSQPIREXFPGGXPTGFSASAGGTSVFASISLPFTFTSV 161
           C   +     +++ S+     M + +R   PG  P GF+  AG  SVF  +S+   FTS+
Sbjct: 484 CILFWTVYSQMTTFSVEQATRMDRHLR---PGAAPGGFAIPAGSLSVFLFLSI-LLFTSL 539

Query: 160 TMAINA*FANXLMNR 116
              +    A  L  R
Sbjct: 540 NERVLVPAARRLTRR 554


>06_03_0517 -
           21674155-21674334,21674420-21674674,21674829-21674969,
           21675070-21675228,21676578-21676738,21680167-21680302
          Length = 343

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 216 ALAEKPVGXPPGKXSLIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDL 377
           ALA+K V  PP + +         G  +I  + Q+    P QT++++   YG +
Sbjct: 25  ALADKLVAAPPPRKNRANPPPAVPGLPIIGNLHQLKEKKPHQTFAKWSETYGPI 78


>07_03_0861 + 22072041-22072789,22074065-22074164
          Length = 282

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 279 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRH 401
           D   RR+I +IC I+ ++PKQ +S+ ++ + +    GAR+ +
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEY 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,787
Number of Sequences: 37544
Number of extensions: 311404
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)