Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2209
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 40 2e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 35 0.007
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 33 0.028
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 31 0.085
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 1.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 1.4
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 27 2.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.4
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.2
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 26 4.2
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 7.3
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 25 7.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 9.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 9.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.7
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/69 (28%), Positives = 41/69 (59%)
Frame = +1
Query: 250 SPTLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNLATGVFDILTSIETLKLNDC 429
+P+ ++D S C +T+I+ F + + L+ D+S+ L L V + L ++ET+K+N
Sbjct: 636 NPSATFIDFSFCPLTTIDPAF--SYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYN 693
Query: 430 KLSNISEVL 456
++IS+ +
Sbjct: 694 HFTSISDAI 702
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 35.1 bits (77), Expect = 0.007
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +1
Query: 259 LQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNLATGVFDILTSIETLKLNDCKLS 438
L YL S+C + SI F ++ +L+++DLS N L + + + L + +L L K++
Sbjct: 334 LLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGE-LPQLCSLNLASNKIT 392
Query: 439 NISEVLFXNAAHLQEFGIGR 498
+ +HLQ + R
Sbjct: 393 GCRTFYHISLSHLQILVLSR 412
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 54 LQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYV 158
L+ + +L + + F L+ L+ +DLSGN ++ +
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI 371
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 33.1 bits (72), Expect = 0.028
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 3 NNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPIGVL 176
NNI T++ + + L NR+ R+E +GL+ L +++L GN I ++ + L
Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIEN--LEGLDRLTNLELGGNKIRVIENLDTL 169
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 31.5 bits (68), Expect = 0.085
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 253 PTLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNLATG-VFDILTSIETLKLNDC 429
P+L+ L L I + F N+ L T+ L+NN A G D+ I L L+
Sbjct: 217 PSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSST 276
Query: 430 KLSNISEV 453
L++++E+
Sbjct: 277 SLADVAEL 284
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 211 DNPIGNVEGPFLVSPTLQYLDLSNCNITSINSQFFDNITTLMT-VDLSNN 357
++ IGN+ PFL LQ+L + N I + D + + T D S N
Sbjct: 262 EHNIGNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRN 311
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -3
Query: 506 DSFRPIPNSWRCAALXNKTSEMFESLQSLSFKVSMLVKISKTPVAKFLRGLLERSTVIR 330
D R IP C A + E SL + +F + V RGL ERST I+
Sbjct: 210 DIDRFIPELINCIAHPEEVPETIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIK 268
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 316 DNITTLMTVDLSNNPLKNLATGVFDILTSIETLKLNDCKLSNISEV 453
D I L + +S++ L G+ ++ ++T L DC ISE+
Sbjct: 7 DIIRFLKLIGISHSTAIKLVDGILPVMIGLKTSYLVDCVFLEISEL 52
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 60 LADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPIGVLGFPRFAKRGASRQSN 221
+ ++ LT++ EAF G+ SGN ++ +G+ P + GAS +N
Sbjct: 81 MTEDGLTKLNLEAFLGV--------SGNTQELLESLGISAIPDLSNLGASNNNN 126
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 357 IIGEVYCHKGCDIVKELRID---GGYIAVT*IEILQRWRDEERAFDVA 223
I+GEVY H D++ R D G T E+ W+ + A DVA
Sbjct: 5 IVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVA 52
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 3 NNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYV 158
N+I L FP +++ L +NR+T + + K L L + L+ N++ +
Sbjct: 51 NDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEI 102
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 101 ERFTFDSG-QSIIS*LQ--SPHLDIVREGLEGCNV 6
E+F+F+ G Q S LQ +P +D EG+E C +
Sbjct: 149 EQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKI 183
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 464 LXNKTSEMFESLQSLSFKVSMLVKISKTP 378
L + TSE+ E+L++LSF S V++ KTP
Sbjct: 356 LDSITSEIIENLRNLSFAPS--VQMHKTP 382
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = +1
Query: 241 FLVSPTLQYLDLSNCNITSINSQFFDNIT-----TLMTVDLSNNPLKNL--ATGVFDILT 399
F +S + ++ C TSI S+++ N+T + + + +PL + ++ + DIL
Sbjct: 3456 FPISKSAVRTNIERCVQTSIESKYYKNLTDYSLENIYIIQENKSPLLIIDPSSQILDILP 3515
Query: 400 SIETLKLNDCKLSNISEVLFXNAAHL 477
S+ K +D L + S F N L
Sbjct: 3516 SLYKGKASD--LISFSNKSFQNQIKL 3539
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 127 ISIKYSRPLNASRSTLVSRLSANCNLLILISFGKGLR 17
+SIK +PL +RS + +S C L L S+ G R
Sbjct: 825 LSIKLFKPLELTRSFWRTLVSTFCRCLRLSSYVMGQR 861
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 139 PDKSISIKYSRPLNASRSTLVSRLSANCNLL 47
PD P+++S+ TLV + +N NLL
Sbjct: 593 PDSFSDSAVDLPVDSSKYTLVGKTQSNSNLL 623
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 289 ITSINSQFFDNITTLMTVDLSNNPLKNLATGVFDILTSIETLKLNDCKLSNISEVLFXNA 468
I S+NS F DN+ + +D L++++T + T + +++ +LS E LF
Sbjct: 384 IPSLNSIFIDNLNSFKNLD----SLRDMSTQINKHYTGY-FIPVSNNELSTKDEYLFLQK 438
Query: 469 AHLQE 483
+ L E
Sbjct: 439 SSLTE 443
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +1
Query: 259 LQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNL 372
++YL+L+N + + ++ L +DLS+N + ++
Sbjct: 869 VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI 906
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,394
Number of Sequences: 5004
Number of extensions: 43388
Number of successful extensions: 138
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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