Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2208
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115...    28   8.0  
06_03_1389 + 29824783-29824940,29825049-29825265                       28   8.0  

>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
            26812145-26813253
          Length = 1188

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 118  TKPAQKPRKTKKVRHFISLVEIIPGFXPL 32
            T PA  P KTK+  H  +  E+  GF PL
Sbjct: 1134 TGPAATPAKTKRHLHLTTSPELEDGFLPL 1162


>06_03_1389 + 29824783-29824940,29825049-29825265
          Length = 124

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 218 ARAAAACPGRSSMMHREVVV 159
           A AAAA P RS MMHR   +
Sbjct: 92  AEAAAAAPARSPMMHRRPTI 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,461
Number of Sequences: 37544
Number of extensions: 265952
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)