Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2199
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    42   5e-05
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   1.6  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    26   3.8  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    26   3.8  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   5.0  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   5.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.6  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = +3

Query: 267 ERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXVSEXFVLK 446
           ERVLC+        +LY++K+++     + +G  T  YLIH++GW +SWD  V +  +L+
Sbjct: 9   ERVLCFH-----GPLLYEAKIVDT----EMKGDVTT-YLIHYKGWKNSWDEWVEQDRILQ 58


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 295 GSGS*HRTRSPSVNLYRSPRVETIVN*CLAQN*WELNKITPFNKCDG---*VCKILVKNK 125
           G+G   +   P  N Y +P    + +  +  +   L ++TPF K DG      KIL+K K
Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSKRLQRLTPFKKWDGKDMKGLKILIKAK 584

Query: 124 KK 119
            K
Sbjct: 585 GK 586


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 410 RRVPSLEMD*ILNSXTPSFVFALYDFKNLGIIKHLGFSRVWL 285
           +R+PS +   IL      FV  +   +N G  K +G  +VWL
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWL 600


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 268 NESCATSQTLLKPRCF---MIPRFLKSXRAKTNEGVXLLSI 381
           N + +T   +L   C+   +IP+ +K+ RAK+ EG+  L I
Sbjct: 15  NATASTVFAILGTVCWCVQLIPQIIKNYRAKSTEGLDTLFI 55


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  LESFGRPQPVNIARLLQIIVFFCF 132
           LE FGR  P+ I  L Q I FF +
Sbjct: 322 LEFFGRRMPLIIGALWQSITFFIY 345


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 247 DINSLRGNESCATSQTLLKPRCFMIPRFLKSXRAKTNEGVXLL 375
           D+N+      C +S       C  IP+ +K+ +AK+ EG+ ++
Sbjct: 173 DLNAWPFTAGCISSVLYF---CARIPQIIKNHKAKSTEGLSII 212


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +3

Query: 156 PSHLLNGVILLSS--HQF-WARHQLTMVSTRGLRYKFTEGERVLCYEPD--PTKAKVLYD 320
           PS  +    LL S  H   W RH   + +   L  K T  E V  ++PD      K+L D
Sbjct: 144 PSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLKLLKD 203

Query: 321 SKVLEVVXS 347
               + + S
Sbjct: 204 YSYAQAISS 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,650
Number of Sequences: 5004
Number of extensions: 34953
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)