Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2199
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945...    31   0.71 
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934...    28   5.0  
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825...    28   5.0  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    27   6.6  
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085...    27   8.8  

>11_06_0028 -
           19393700-19393899,19394058-19394116,19394437-19394521,
           19395305-19395474,19397534-19397613,19398288-19398392,
           19399268-19399308,19399400-19399438,19400473-19400818,
           19401762-19401815,19402249-19402350
          Length = 426

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 255 FTEGERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSW 413
           F EGERVL Y        +LY++KV +   +K+   R  V YL H   ++  W
Sbjct: 16  FKEGERVLAYH-----GPLLYEAKV-QKSENKEDEWRYHVHYLCHIVVYHHVW 62


>08_02_0556 +
           18592393-18592580,18592839-18593031,18593110-18593499,
           18593576-18593686,18593789-18593867,18594048-18594109,
           18594182-18594238,18594498-18594581
          Length = 387

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 177 VILLSSHQFWARHQLTMVSTRGLRYKFTEGERVLC 281
           V++   H F A  ++T++    LR+KF +G  V C
Sbjct: 106 VVIAHYHNFPAHTRITILKEFLLRFKFADGREVDC 140


>04_01_0003 +
           79564-79698,79879-79956,81025-81388,82399-82437,
           82561-82601,83258-83362,83914-83919,84044-84123,
           86744-86913,87664-87748,88067-88125,88451-88464
          Length = 391

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 FTEGERVLCYE-PDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQG 398
           F EGERVL Y  P   +AK+L  S  L+V  S++K       Y +H+ G
Sbjct: 27  FKEGERVLAYHGPLLYEAKIL-SSGFLKVQKSENKEDEW--RYHVHYLG 72


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 281 AQDSFPLSEFIS*PPCRDHC*LMPC 207
           +QD +PLS+ ++ P C D    +PC
Sbjct: 741 SQDDYPLSQTLTTPGCLDESGYVPC 765


>04_04_1331 -
           32706043-32707248,32707411-32707652,32707737-32708562,
           32708640-32708863,32708946-32709262,32709381-32709443,
           32709465-32709640,32710609-32710985,32711416-32711470,
           32711614-32711913
          Length = 1261

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 165 LLNGVILLSSHQFWARHQLTMVSTRGLRYKFTEGERVLCYEPDPTKAKV 311
           LL+ V + +    W R Q+ +V+     +  T  E +L  +PD T A+V
Sbjct: 433 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIHENILYGKPDATMAEV 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,381
Number of Sequences: 37544
Number of extensions: 221353
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)