Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2199
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical...    34   0.052
AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical...    34   0.052
AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical...    33   0.091
AL032626-8|CAA21528.1|  335|Caenorhabditis elegans Hypothetical ...    33   0.091

>AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11b protein.
          Length = 406

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 246 RYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           R +F  GE+V C     T+    YD+ +++++   D +      Y +HF+GWNS +D  +
Sbjct: 331 REQFIIGEQVTC-----TQNGKPYDAYIVDIITDTDGKDF----YCVHFKGWNSRYDEKI 381



 Score = 33.9 bits (74), Expect = 0.069
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 252 KFTEGERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           +F  GE V C      K KV YD+ + ++   KD  G+    Y IHF+GWN+ +D  +
Sbjct: 231 RFVIGELVAC----TYKGKV-YDAVITDIKPDKD--GKEC--YCIHFKGWNNRYDEQI 279



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 225 MVSTRGLRYKFTEGERVLC-YEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGW 401
           M   R  +  F  GE + C Y+  P      YD+ ++ +    ++ G+    Y +HF+GW
Sbjct: 1   MAPNRTPKQNFAIGEDITCVYKTHP------YDATIIGI--ENNREGKEC--YCVHFKGW 50

Query: 402 NSSWDRXV 425
           N  +D  +
Sbjct: 51  NCRYDEKI 58


>AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical
           protein Y37D8A.11a protein.
          Length = 499

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 246 RYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           R +F  GE+V C     T+    YD+ +++++   D +      Y +HF+GWNS +D  +
Sbjct: 424 REQFIIGEQVTC-----TQNGKPYDAYIVDIITDTDGKDF----YCVHFKGWNSRYDEKI 474



 Score = 33.9 bits (74), Expect = 0.069
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 252 KFTEGERVLCYEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           +F  GE V C      K KV YD+ + ++   KD  G+    Y IHF+GWN+ +D  +
Sbjct: 324 RFVIGELVAC----TYKGKV-YDAVITDIKPDKD--GKEC--YCIHFKGWNNRYDEQI 372



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 225 MVSTRGLRYKFTEGERVLC-YEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGW 401
           M   R  +  F  GE + C Y+  P      YD+ ++ +    ++ G+    Y +HF+GW
Sbjct: 1   MAPNRTPKQNFAIGEDITCVYKTHP------YDATIIGI--ENNREGKEC--YCVHFKGW 50

Query: 402 NSSWDRXV 425
           N  +D  +
Sbjct: 51  NCRYDEKI 58


>AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical
           protein Y37D8A.9b protein.
          Length = 337

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 255 FTEGERVLC-YEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           F  GE V C Y+  P      YD+K+ ++  + D  G+    Y +HF+GWN+ +D  +
Sbjct: 7   FEVGENVACIYKGKP------YDAKITDIKTNSD--GKEL--YCVHFKGWNNRYDEKI 54


>AL032626-8|CAA21528.1|  335|Caenorhabditis elegans Hypothetical
           protein Y37D8A.9a protein.
          Length = 335

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 255 FTEGERVLC-YEPDPTKAKVLYDSKVLEVVXSKDKRGRXTVEYLIHFQGWNSSWDRXV 425
           F  GE V C Y+  P      YD+K+ ++  + D  G+    Y +HF+GWN+ +D  +
Sbjct: 7   FEVGENVACIYKGKP------YDAKITDIKTNSD--GKEL--YCVHFKGWNNRYDEKI 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,127
Number of Sequences: 27780
Number of extensions: 187785
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)