Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2197
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   4.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   9.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   9.6  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 558 HRHPLISTIPLFAG*PSELPXFVRNVDLHDD 650
           H H  +    +FA   +E P FV +  +H+D
Sbjct: 51  HHHSHMPPHSVFAANNAEFPEFVHSGMVHND 81


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 558 HRHPLISTIPLFAG*PSELPXFVRNVDLHDD 650
           H H  +    +FA   +E P FV +  +H+D
Sbjct: 51  HHHSHMPPHSVFAANNAEFPEFVHSGMVHND 81


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 287 IPPPNTGGNPCGASP 243
           IPP + GG P G  P
Sbjct: 60  IPPHHYGGPPSGGQP 74


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
 Frame = -3

Query: 204 LCAIFETTVLGL---------GLRSEASSRLGTCFYW 121
           LCA++ TT+L           G  SEA      CFYW
Sbjct: 285 LCALWITTLLLFTILLAYGCAGATSEAEKIAKICFYW 321


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 TLQNLHKARHDLREXGXRSRGPYTHRH 566
           TL+N+ K   DL E G +      +RH
Sbjct: 101 TLENMTKIDKDLTELGQKKYLEKRNRH 127


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 TLQNLHKARHDLREXGXRSRGPYTHRH 566
           TL+N+ K   DL E G +      +RH
Sbjct: 101 TLENMTKIDKDLTELGQKKYLEKRNRH 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,226
Number of Sequences: 336
Number of extensions: 3477
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)