Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2197
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   1.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.9  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 400 SVTVPRLFSVDSTP*SVSGSKMSLRNKVTLYKTCIRPVMTYASXXXAHA 546
           ++T P L    STP SVS SK++         T  +  M YAS   A A
Sbjct: 333 NITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAA 381


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +3

Query: 471 SEQGDTLQNLHKARHDLREXGXRSRGPYTHRHPLISTIPLFAG*PSELP-XFVRNVDLHD 647
           S Q   L +LH++R      G   R P      + ST+P   G P   P  F R  +   
Sbjct: 335 SSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDP 394

Query: 648 DLGLESXQKYMKS 686
            +  +S + Y ++
Sbjct: 395 TIPPDSIKVYSRT 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,289
Number of Sequences: 5004
Number of extensions: 57154
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)