Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2197
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   3.5  
06_03_0088 + 16469006-16469189,16469664-16469797                       29   4.6  
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    28   6.1  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   6.1  
01_06_1724 - 39452858-39454309                                         28   6.1  
11_06_0575 - 25125945-25126000,25126111-25126240                       28   8.1  
11_03_0049 - 9318578-9319312                                           28   8.1  
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537...    28   8.1  

>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 341 DLPGPGYGLTKESNRGCEIPP-PNTGGNPCGASP 243
           D P PG       N  C +PP P+ GG   GA P
Sbjct: 9   DQPSPGRSPNPNLNLPCPLPPIPSCGGGGGGAGP 42


>06_03_0088 + 16469006-16469189,16469664-16469797
          Length = 105

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 365 IQGNAQVLDLPGPGYGLTKESNRGCEIPPPNTGGNP 258
           ++ NA +L  P  G  +T +++  C   PP  GGNP
Sbjct: 39  LEDNAIILVHPSRGQAVTSDTS--CGTKPPKLGGNP 72


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 483 HLVPKGHFTPAYRSWGRVYRE*TRH 409
           H  P G +TP   SWG ++R  T H
Sbjct: 221 HGPPTGRWTPMRESWGSIWRLDTNH 245


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 YSSRNKSLIAKKLQSAALALGQWFRKWR 200
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 341 QVPGRYPGCIDDIPPAYKISP*PCRVY 421
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>11_06_0575 - 25125945-25126000,25126111-25126240
          Length = 61

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 128 KQVPNREEASERSPSPRTVVSKMAHRHQPNEKYCG 232
           +Q  N EE  E  P+P  +  K++ R    E+ CG
Sbjct: 21  EQQENAEEGEESRPTPTAMEKKISCRSLKEEEICG 55


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 57  DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 188
           D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>07_01_0711 +
           5374717-5374992,5375022-5375277,5375317-5375384,
           5375556-5376287,5377013-5377270
          Length = 529

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +2

Query: 140 NREEASERSPSPRTVVSKMAHRHQPNEKYCGAISEGKLHTDFLPY*EEESHTPDYSL*SI 319
           + +E+S RS    ++    A RH  N+     + + +   +++   +E +HT +YSL  +
Sbjct: 452 HHDESSARSSVDISMEDTEAPRHLLNDTDLDLVDDRERQANYMLSDQEYAHTREYSLELL 511

Query: 320 HTLGQE 337
             +G +
Sbjct: 512 KKIGMD 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,338
Number of Sequences: 37544
Number of extensions: 441689
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)