Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2197
(692 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 81 2e-15
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 81 2e-15
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 69 5e-12
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 62 7e-10
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 60 3e-09
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 55 8e-08
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 55 8e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 53 4e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 53 4e-07
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 47 3e-05
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 46 6e-05
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 45 9e-05
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 45 9e-05
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 45 9e-05
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 45 9e-05
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 45 9e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 43 5e-04
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 41 0.001
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 34 0.16
AE014296-3472|AAS65085.1| 558|Drosophila melanogaster CG33486-P... 29 4.5
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 29 6.0
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 80.6 bits (190), Expect = 2e-15
Identities = 47/151 (31%), Positives = 72/151 (47%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
GVPQG +DIP++ L+LFADD VY + + S I + +QS L
Sbjct: 665 GVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDI 724
Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
+++KW+I INP K+ A+ F L P I W ++YLG+
Sbjct: 725 YYKKWKIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSP-------IQWVDNIRYLGIIF 777
Query: 363 DASMTFRPHIKSVRDRAAFILGRLYPMICKR 455
D +TF+ HI + + I+ LYP+I ++
Sbjct: 778 DKKLTFKYHINNTIMKVNKIICTLYPLINRK 808
Score = 35.9 bits (79), Expect = 0.052
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 457 SKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHI 561
SK+S+ NK+ ++KT P++ Y S +THI
Sbjct: 809 SKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHI 843
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 80.6 bits (190), Expect = 2e-15
Identities = 47/151 (31%), Positives = 72/151 (47%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
GVPQG +DIP++ L+LFADD VY + + S I + +QS L
Sbjct: 613 GVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDI 672
Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
+++KW+I INP K+ A+ F L P I W ++YLG+
Sbjct: 673 YYKKWKIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSP-------IQWVDNIRYLGIIF 725
Query: 363 DASMTFRPHIKSVRDRAAFILGRLYPMICKR 455
D +TF+ HI + + I+ LYP+I ++
Sbjct: 726 DKKLTFKYHINNTIMKVNKIICTLYPLINRK 756
Score = 35.9 bits (79), Expect = 0.052
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 457 SKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHI 561
SK+S+ NK+ ++KT P++ Y S +THI
Sbjct: 757 SKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHI 791
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 69.3 bits (162), Expect = 5e-12
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSP-----PTHLALFADDTTVYYSSRNKSLIAKKLQSAA 167
GVPQG +D+P+ + LA FADD V Y SR + A +Q A
Sbjct: 639 GVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFA 698
Query: 168 LALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKY 347
+W R+W I IN +KS V F PP+ + +P KY
Sbjct: 699 YRFSEWARRWNIGINSSKSNNVCF-----------TLKRRTPPPVYIEEVPVPQPNAAKY 747
Query: 348 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 455
LGV LD +TF H+ +R R + + Y ++ R
Sbjct: 748 LGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSR 783
Score = 30.7 bits (66), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 451 SGSKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHI 561
S SK+SL NK+T+YK + P Y A +HI
Sbjct: 782 SRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHI 818
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 62.1 bits (144), Expect = 7e-10
Identities = 43/148 (29%), Positives = 64/148 (43%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
GVPQG DIP + ++ FADDT + SR+ +L + + +
Sbjct: 637 GVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKK 696
Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
W WRI +N K V F PP+ L S +P A +V YLGV L
Sbjct: 697 WLSDWRIKVNEQKCKHVTFTLNRQD-----------CPPLLLNSIPLPKADEVTYLGVHL 745
Query: 363 DASMTFRPHIKSVRDRAAFILGRLYPMI 446
D +T+R HI++ + + L+ +I
Sbjct: 746 DRRLTWRRHIEAKKTQLKLKANNLHWLI 773
Score = 37.5 bits (83), Expect = 0.017
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 451 SGSKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHID 564
SGS +SL +KV LY + ++P+ TY S +A ++ID
Sbjct: 775 SGSPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNID 812
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 60.1 bits (139), Expect = 3e-09
Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 8/144 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTH--------LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG D+P H LA +ADD + YSS + A+ LQ
Sbjct: 640 GVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQ 699
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
L W ++W + +NP K+ F +T PI L + +
Sbjct: 700 EYLTTLAAWCKRWILKVNPQKTINPCFTLKTLSP---------VTAPIELEGVILDQPSQ 750
Query: 339 VKYLGVTLDASMTFRPHIKSVRDR 410
KYLG+TLD +TF PH+K+ R
Sbjct: 751 AKYLGITLDKRLTFGPHLKATTRR 774
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 55.2 bits (127), Expect = 8e-08
Identities = 40/132 (30%), Positives = 53/132 (40%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
GVPQG D P + FADDT + S+ L ++ +
Sbjct: 635 GVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVER 694
Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
W WRI IN K V F PP+ L + IP A +V YLGV L
Sbjct: 695 WLADWRISINVQKCKQVTF-----------TLNKQTCPPLVLNNICIPQADEVTYLGVHL 743
Query: 363 DASMTFRPHIKS 398
D +T+R HI++
Sbjct: 744 DRRLTWRKHIEA 755
Score = 33.1 bits (72), Expect = 0.37
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 457 SKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHID 564
S +SL K LY + ++P+ TY S +A R++ID
Sbjct: 775 SPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNID 810
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 55.2 bits (127), Expect = 8e-08
Identities = 40/132 (30%), Positives = 53/132 (40%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
GVPQG D P + FADDT + S+ L ++ +
Sbjct: 635 GVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVER 694
Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
W WRI IN K V F PP+ L + IP A +V YLGV L
Sbjct: 695 WLADWRISINVQKCKQVTF-----------TLNKQTCPPLVLNNICIPQADEVTYLGVHL 743
Query: 363 DASMTFRPHIKS 398
D +T+R HI++
Sbjct: 744 DRRLTWRKHIEA 755
Score = 33.1 bits (72), Expect = 0.37
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 457 SKMSLRNKVTLYKTCIRPVMTYASXXXAHAXRTHID 564
S +SL K LY + ++P+ TY S +A R++ID
Sbjct: 775 SPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNID 810
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.8 bits (121), Expect = 4e-07
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTH--------LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P P +A +ADDT V S++ LQ
Sbjct: 641 GVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQ 700
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
A QW W + IN K V F P ++L + I +
Sbjct: 701 EYLDAFQQWAENWNVRINAEKCANVTF-----------ANRTGSCPGVSLNGRLIRHHQA 749
Query: 339 VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 455
KYLG+TLD +TF HI +++ + R+ +I R
Sbjct: 750 YKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPR 788
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 52.8 bits (121), Expect = 4e-07
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSPPTH--------LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P P +A +ADDT V S++ LQ
Sbjct: 443 GVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQ 502
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
A QW W + IN K V F P ++L + I +
Sbjct: 503 EYLDAFQQWAENWNVRINAEKCANVTF-----------ANRTGSCPGVSLNGRLIRHHQA 551
Query: 339 VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 455
KYLG+TLD +TF HI +++ + R+ +I R
Sbjct: 552 YKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPR 590
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 46.8 bits (106), Expect = 3e-05
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 8/138 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P R PT L+ +ADDT V S + + +
Sbjct: 697 GVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNE 756
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V+F + + + Q+I K
Sbjct: 757 NYLKTFSDWADKWGISVNAAKTGHVIFTLKNDLPTN--------SMNVKIKGQTIKKESK 808
Query: 339 VKYLGVTLDASMTFRPHI 392
YLGVTLD+ +T H+
Sbjct: 809 QSYLGVTLDSKLTLSSHV 826
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 45.6 bits (103), Expect = 6e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +3
Query: 63 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPTKSTAVL 236
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 275 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 334
Query: 237 FQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAA 416
F TPP+ + Q K +YLG+ LD +TF H+ ++ +
Sbjct: 335 FSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTI 386
Query: 417 FILGRLYPMICK 452
+L +I K
Sbjct: 387 AAYKKLEWLIGK 398
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.6 bits (103), Expect = 6e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +3
Query: 63 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPTKSTAVL 236
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 237 FQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAA 416
F TPP+ + Q K +YLG+ LD +TF H+ ++ +
Sbjct: 782 FSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTI 833
Query: 417 FILGRLYPMICK 452
+L +I K
Sbjct: 834 AAYKKLEWLIGK 845
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.6 bits (103), Expect = 6e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +3
Query: 63 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPTKSTAVL 236
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 237 FQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAA 416
F TPP+ + Q K +YLG+ LD +TF H+ ++ +
Sbjct: 782 FSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTI 833
Query: 417 FILGRLYPMICK 452
+L +I K
Sbjct: 834 AAYKKLEWLIGK 845
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.6 bits (103), Expect = 6e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +3
Query: 63 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPTKSTAVL 236
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 237 FQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAA 416
F TPP+ + Q K +YLG+ LD +TF H+ ++ +
Sbjct: 782 FSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTI 833
Query: 417 FILGRLYPMICK 452
+L +I K
Sbjct: 834 AAYKKLEWLIGK 845
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 45.2 bits (102), Expect = 9e-05
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P PT L+ +ADDT V S + + +
Sbjct: 569 GVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE 628
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V++ NL + + Q+I K
Sbjct: 629 NYLKTFSDWADKWGISVNAAKTGHVIY-------TLKNDIPTNL-KTMKIKGQAIKKESK 680
Query: 339 VKYLGVTLDASMTFRPHIKSV 401
YLGV LD+ +T PH+ V
Sbjct: 681 QSYLGVILDSKLTLSPHVTKV 701
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.2 bits (102), Expect = 9e-05
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P PT L+ +ADDT V S + + +
Sbjct: 685 GVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE 744
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V++ NL + + Q+I K
Sbjct: 745 NYLKTFSDWADKWGISVNAAKTGHVIY-------TLKNDIPTNL-KTMKIKGQAIKKESK 796
Query: 339 VKYLGVTLDASMTFRPHIKSV 401
YLGV LD+ +T PH+ V
Sbjct: 797 QSYLGVILDSKLTLSPHVTKV 817
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.2 bits (102), Expect = 9e-05
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P PT L+ +ADDT V S + + +
Sbjct: 685 GVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE 744
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V++ NL + + Q+I K
Sbjct: 745 NYLKTFSDWADKWGISVNAAKTGHVIY-------TLKNDIPTNL-KTMKIKGQAIKKESK 796
Query: 339 VKYLGVTLDASMTFRPHIKSV 401
YLGV LD+ +T PH+ V
Sbjct: 797 QSYLGVILDSKLTLSPHVTKV 817
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 45.2 bits (102), Expect = 9e-05
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P PT L+ +ADDT V S + + +
Sbjct: 647 GVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE 706
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V++ NL + + Q+I K
Sbjct: 707 NYLKTFSDWADKWGISVNAAKTGHVIY-------TLKNDIPTNL-KTMKIKGQAIKKESK 758
Query: 339 VKYLGVTLDASMTFRPHIKSV 401
YLGV LD+ +T PH+ V
Sbjct: 759 QSYLGVILDSKLTLSPHVTKV 779
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 45.2 bits (102), Expect = 9e-05
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P PT L+ +ADDT V S + + +
Sbjct: 685 GVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNE 744
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ W KW I +N K+ V++ NL + + Q+I K
Sbjct: 745 NYLKTFSDWADKWGISVNAAKTGHVIY-------TLKNDIPTNL-KTMKIKGQAIKKESK 796
Query: 339 VKYLGVTLDASMTFRPHIKSV 401
YLGV LD+ +T PH+ V
Sbjct: 797 QSYLGVILDSKLTLSPHVTKV 817
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 42.7 bits (96), Expect = 5e-04
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIP-----RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQ 158
GVPQG +D+P R PT L+ +ADDT V S + + +
Sbjct: 685 GVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNE 744
Query: 159 SAALALGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARK 338
+ + W KW I +N K+ V+F + + Q I K
Sbjct: 745 NYLKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLR--------TMKIKGQVIKIESK 796
Query: 339 VKYLGVTLDASMTFRPHI 392
YLGV LD+ +T H+
Sbjct: 797 QSYLGVILDSKLTLSSHV 814
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 294 PPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRL 434
P + +++P+ R +YLG+T+ M F HI S+R R ++G L
Sbjct: 719 PTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGAL 765
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 34.3 bits (75), Expect = 0.16
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 GVPQGXXXXXXXXXXXXNDIPRSP---PTHLALFADDTTVYYSSRNKSLIAKKLQSAALA 173
GVPQG + I R P + + FADD + + + A
Sbjct: 50 GVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRA 109
Query: 174 LGQWFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLG 353
+ W +++ P K+ AVL T + + + +R +KYL
Sbjct: 110 IEHWLSSMGLELAPEKTKAVLISSRKAVE----------TATVEVGGTLVSSSRAIKYLE 159
Query: 354 VTLDASMTFRPHIKSVRDRA 413
V +D ++FR H+ +A
Sbjct: 160 VMIDTRLSFREHLAYASSKA 179
>AE014296-3472|AAS65085.1| 558|Drosophila melanogaster CG33486-PA
protein.
Length = 558
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 492 QNLHKARHDLREXGXRSRGPYTHRHP 569
Q LH ++H LRE R G + HR P
Sbjct: 18 QILHGSKHSLRELAYRQSGKHRHRGP 43
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 330 ARKVKYLGVTLDASMTFRPHIKSVRDRAAF---ILGRLYPMI 446
A +KYLGV +D ++F+ H + +AA L R+ P +
Sbjct: 714 AETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNV 755
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,882,311
Number of Sequences: 53049
Number of extensions: 712755
Number of successful extensions: 1725
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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