Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2197
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.002
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.005
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    34   0.11 
S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        29   2.4  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        29   2.4  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    29   2.4  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    29   2.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 30/130 (23%), Positives = 49/130 (37%)
 Frame = +3

Query: 3   GVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQ 182
           GVPQG             D+P    T L  +ADD ++    +     A+K+Q     + +
Sbjct: 532 GVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAK 591

Query: 183 WFRKWRIDINPTKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTL 362
           + ++  + I+  KST  +F                  P I      IP     K LG+TL
Sbjct: 592 YLKERGMSISAEKSTVTVFS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITL 643

Query: 363 DASMTFRPHI 392
           +     + H+
Sbjct: 644 NTMTGTKDHV 653


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   GVPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAALAL 176
           GVPQG            NDI    P  +A   FADDT +Y +S  K+     LQSA  A+
Sbjct: 76  GVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLY-ASTPKTESENNLQSALDAV 134

Query: 177 GQWFRKWRIDINPTKSTAV 233
             W +  ++ +N +K+  V
Sbjct: 135 VDWTKGSKLTLNQSKTVHV 153


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  ISLTNKLNRRGERTEPCGTP 2
           ISLTN     GERT+PCGTP
Sbjct: 50  ISLTNMPKSTGERTDPCGTP 69


>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 RGCEIPPPNTGGNPC 255
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 RGCEIPPPNTGGNPC 255
           R C +PPP  GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 RGCEIPPPNTGGNPC 255
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 RGCEIPPPNTGGNPC 255
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = +2

Query: 92  IRRRHDCLLFQ*KQVPNREEASERSPSPRTVVSKMAHRHQPNEKYCGAISEGKLHT-DFL 268
           ++ +H   +FQ  Q     +     P P    S M H HQ N  +  A    + H   +L
Sbjct: 416 VQMQHQMQMFQQMQPYGMPQGGP--PPPHAAASMMNHPHQQNHPHMNAQMTQQQHPGQYL 473

Query: 269 PY*EEESHTPDYSL*SIHTLGQEGQVPGRYPGCIDDI--PPAYKIS 400
           P    +   P +     H + Q+ Q  GR PG ++ +   P Y++S
Sbjct: 474 PQQYMQMVPPPH-----HQM-QQMQQQGRRPGGVEPLMGGPPYQMS 513


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 348 LGVTLDASMTFRPHIKSV 401
           LG+  D+ +TF+PHIK +
Sbjct: 198 LGILTDSKLTFKPHIKKI 215


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +2

Query: 167 PSPRTVVSKMAHRHQPNEKYCGAISEGKLHT-DFLPY*EEESHTPDYSL*SIHTLGQEGQ 343
           P P    S M H HQ N  +  A    + H   +LP    +   P +     H + Q+ Q
Sbjct: 436 PPPHAAASMMNHPHQQNHPHMNAQMTQQQHPGQYLPQQYMQMVPPPH-----HQM-QQMQ 489

Query: 344 VPGRYPGCIDDI--PPAYKIS 400
             GR PG ++ +   P Y++S
Sbjct: 490 QQGRRPGGVEPLMGGPPYQMS 510


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 54  NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINP 215
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+P
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISP 637


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 54  NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINP 215
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+P
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISP 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,784
Number of Sequences: 27780
Number of extensions: 337423
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)