Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2194
         (367 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   9e-04
UniRef50_Q9NHZ4 Cluster: Ornithine decarboxylase antizyme; n=1; ...    32   2.8  
UniRef50_Q2M120 Cluster: GA13283-PA; n=1; Drosophila pseudoobscu...    32   3.7  
UniRef50_UPI0000F21814 Cluster: PREDICTED: hypothetical protein;...    31   8.6  
UniRef50_Q8UVV2 Cluster: Transporter associated with antigen pro...    31   8.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.0 bits (99), Expect = 9e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2

Query: 354 FLLLSCVDELTAHLMLSGYWSP 289
           FLLL  VDELTAHL+LSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q9NHZ4 Cluster: Ornithine decarboxylase antizyme; n=1;
           Pristionchus pacificus|Rep: Ornithine decarboxylase
           antizyme - Pristionchus pacificus
          Length = 142

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 265 PHTLRYIGXRSQYSHNGCPTLQTETHYCFT 176
           P TLRY+G R     N  PTL   TH+  T
Sbjct: 110 PRTLRYVGFRVVAPENFPPTLDATTHFAMT 139


>UniRef50_Q2M120 Cluster: GA13283-PA; n=1; Drosophila
           pseudoobscura|Rep: GA13283-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 914

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = -2

Query: 231 SIVTTAAPPFKPKRITASRQK*AGRWYLPRADSQEVLPP 115
           S V  AAPP  P    A      GRW+  RA  QE  PP
Sbjct: 195 SAVEEAAPPAAPVEAPAPAASVEGRWFRRRAAKQEREPP 233


>UniRef50_UPI0000F21814 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 1065

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -1

Query: 322 SPPDVKWXLEPIDXYNVNAPHTLRYIGXRSQYSHNGCPTLQTETHY 185
           SPPD     EP      N PH LR +   +       P LQT  HY
Sbjct: 146 SPPDSS--SEPYSPQQANDPHMLRTMTPENMCHMTSPPPLQTHPHY 189


>UniRef50_Q8UVV2 Cluster: Transporter associated with antigen
           processing TAP1; n=8; Gnathostomata|Rep: Transporter
           associated with antigen processing TAP1 - Ginglymostoma
           cirratum (Nurse shark)
          Length = 778

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 102 NYNFAGFIFITRWYSFTRGSQS*TFGEXG 16
           NY   G +F+ RW+ F  GS+  + GE G
Sbjct: 114 NYASTGLVFLLRWHFFPPGSKGQSTGEAG 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,371,358
Number of Sequences: 1657284
Number of extensions: 6505835
Number of successful extensions: 13558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13555
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)