Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2194
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243     29   0.85 
09_03_0017 - 11557515-11557553,11558301-11558769,11560527-115605...    29   1.5  
01_06_1749 - 39636951-39638102                                         27   3.4  
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    27   6.0  
08_01_0222 - 1772266-1772358,1781205-1781596,1781898-1782183,178...    26   7.9  

>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
          Length = 724

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 96  YNLRNYWXVGPLVSPHGVGTTAPPISA 176
           Y+   YW V P + P    TT PP SA
Sbjct: 537 YDEEIYWLVDPALGPASATTTTPPTSA 563


>09_03_0017 -
           11557515-11557553,11558301-11558769,11560527-11560556,
           11562437-11562999
          Length = 366

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 120 PPSNYA-NYNFAGFIFITRWY 61
           PP+ Y  +Y  AGF++ TRWY
Sbjct: 291 PPNKYRPHYLAAGFVYSTRWY 311


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 231 SIVTTAAPPFKPKRITASRQK*AGRWYLPRADSQEV 124
           S+ + AAPPF P RIT+      GR +      ++V
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARKDV 200


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 172 LP*SSNAFRFEGWG-SRCDYTETLXLYISRCVAHLRCXCLWAPV 300
           LP  ++A    G+  S+  YT+ L +Y++RC   +   C   PV
Sbjct: 348 LPLPADAGELHGYHTSKVAYTDRLRVYVTRCALLIVQYCCCQPV 391


>08_01_0222 -
           1772266-1772358,1781205-1781596,1781898-1782183,
           1782313-1782372
          Length = 276

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 162 GRWYLPRADSQEVLPPSNYANY 97
           G+WY    D++E LPP +  NY
Sbjct: 116 GKWYR-MGDAEETLPPRSQLNY 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,738
Number of Sequences: 37544
Number of extensions: 194017
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)