Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2194
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya bind...    26   7.2  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    26   7.2  
Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    26   9.5  
L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 ISQGVWRIYVVXVYGLQXPLNIRW 319
           I   V RI+   VYG++ P+N+ W
Sbjct: 222 IISSVRRIHDAAVYGIKDPINVSW 245


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 231 SIVTTAAPPFKPKRITASRQK*AGRWYLPRADSQEVLP 118
           S+    +PP K KR+    +K   R  +P +D +E +P
Sbjct: 258 SVEKEKSPPAKRKRVNDENKKAKKRLIVPDSDDEEQVP 295


>U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya binding
           family protein 2 protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +2

Query: 128 SCESARGRYHR--PAYFC 175
           SCE   GRYHR    YFC
Sbjct: 372 SCEECSGRYHRQHAPYFC 389


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 126  VLPPSNYANYNFAGFIFITRWYS 58
            V+PP+N   +N    IF TR Y+
Sbjct: 2660 VIPPTNLTTWNIPSVIFATRNYN 2682


>Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical
           protein K08C9.4 protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 71  HDGIPSPVEVNREH 30
           HDGIPSP++   +H
Sbjct: 119 HDGIPSPIDAYAQH 132


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 131 CESARGRYHRPAYFCREAVMRFG 199
           C   +    RP YFC    MRFG
Sbjct: 257 CHPEQKMESRPTYFCDRCPMRFG 279


>L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical
           protein F42H10.3 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 193 THYCFTAEIGGAVVPTP 143
           TH  ++ E GGAV PTP
Sbjct: 170 THLIYSTEQGGAVSPTP 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,427,390
Number of Sequences: 27780
Number of extensions: 157064
Number of successful extensions: 318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)