Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2190
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 83 1e-17
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 80 1e-16
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 28 0.59
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.1
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 7.2
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 7.2
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 24 7.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 24 9.5
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 83.0 bits (196), Expect = 1e-17
Identities = 36/64 (56%), Positives = 50/64 (78%)
Frame = +2
Query: 83 VPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQIE 262
VPKDKAIK++ IRN+V AA+RD+++ASVY + +PKLY KL YCVSCAIHS+ + +
Sbjct: 30 VPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSR 89
Query: 263 ERQK 274
E ++
Sbjct: 90 EGRR 93
Score = 39.9 bits (89), Expect = 1e-04
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 19 GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
GR KHGRGHVK VRC C+R K + ++
Sbjct: 9 GRNKHGRGHVKFVRCINCSRAVPKDKAIKR 38
Score = 29.9 bits (64), Expect = 0.15
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +3
Query: 237 AKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 338
++VVR RS++ RRIRT PP+ + RD + P AV +
Sbjct: 81 SRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 80.2 bits (189), Expect = 1e-16
Identities = 34/64 (53%), Positives = 50/64 (78%)
Frame = +2
Query: 83 VPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQIE 262
VPKDKAIK++ IRN+V AA+RD+++ASVY + +PK+Y KL YCVSCAIH++ + +
Sbjct: 30 VPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRSR 89
Query: 263 ERQK 274
E ++
Sbjct: 90 EGRR 93
Score = 38.3 bits (85), Expect = 4e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 19 GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
GR KHGRGH K VRC C+R K + ++
Sbjct: 9 GRNKHGRGHTKFVRCINCSRAVPKDKAIKR 38
Score = 31.9 bits (69), Expect = 0.036
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +3
Query: 237 AKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 338
A+VVR RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 81 ARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 0.59
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 26 PSMDVVTLKL*DAQPAR-GCVPKDKAIKKFVIRNIVXAAAVRDI 154
PS+ + + ++P R CVPKDKAI + +NI A VRD+
Sbjct: 2 PSIILYPIYFDKSRPRRFRCVPKDKAILNPLAKNI--ADVVRDL 43
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 244 LSGTDRRKTEESVLLPRVTSLGT 312
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 126 MFLITNFLIALSFGTHPRAGCASHSFNV---TTSMLGASLP 13
++ T FLI L F + GC++ S +V TT+ + S P
Sbjct: 5 LYFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSVSCP 45
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 203 KLHYCVSCAIHSKSCQEQIEERQKNP 280
+L C +C ++S++C+ +R K P
Sbjct: 24 ELPKCQNCVVYSETCKYNKRKRVKKP 49
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 126 MFLITNFLIALSFGTHPRAGCASHSFNV---TTSMLGASLP 13
++ T FLI L F + GC++ S +V TT+ + S P
Sbjct: 5 LYFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSVSCP 45
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 276 IRTPPKSNFPRDMSR 320
IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,093
Number of Sequences: 5004
Number of extensions: 24185
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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